Literature DB >> 14624008

Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster.

Teldja N Azzouz1, Daniel Schumperli.   

Abstract

The U7 snRNP involved in histone RNA 3' end processing is related to but biochemically distinct from spliceosomal snRNPs. In vertebrates, the Sm core structure assembling around the noncanonical Sm-binding sequence of U7 snRNA contains only five of the seven standard Sm proteins. The missing Sm D1 and D2 subunits are replaced by U7-specific Sm-like proteins Lsm10 and Lsm11, at least the latter of which is important for histone RNA processing. So far, it was unknown if this special U7 snRNP composition is conserved in invertebrates. Here we describe several putative invertebrate Lsm10 and Lsm11 orthologs that display low but clear sequence similarity to their vertebrate counterparts. Immunoprecipitation studies in Drosophila S2 cells indicate that the Drosophila Lsm10 and Lsm11 orthologs (dLsm10 and dLsm11) associate with each other and with Sm B, but not with Sm D1 and D2. Moreover, dLsm11 associates with the recently characterized Drosophila U7 snRNA and, indirectly, with histone H3 pre-mRNA. Furthermore, dLsm10 and dLsm11 can assemble into U7 snRNPs in mammalian cells. These experiments demonstrate a strong evolutionary conservation of the unique U7 snRNP composition, despite a high degree of primary sequence divergence of its constituents. Therefore, Drosophila appears to be a suitable system for further genetic studies of the cell biology of U7 snRNPs.

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Year:  2003        PMID: 14624008      PMCID: PMC1370506          DOI: 10.1261/rna.5143303

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  37 in total

1.  The Sm domain is an ancient RNA-binding motif with oligo(U) specificity.

Authors:  T Achsel; H Stark; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

Review 2.  Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles.

Authors:  C Kambach; S Walke; K Nagai
Journal:  Curr Opin Struct Biol       Date:  1999-04       Impact factor: 6.809

3.  Evidence for three distinct D proteins, which react differentially with anti-Sm autoantibodies, in the cores of the major snRNPs U1, U2, U4/U6 and U5.

Authors:  T Lehmeier; K Foulaki; R Lührmann
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

4.  Unique Sm core structure of U7 snRNPs: assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing.

Authors:  Ramesh S Pillai; Matthias Grimmler; Gunter Meister; Cindy L Will; Reinhard Lührmann; Utz Fischer; Daniel Schümperli
Journal:  Genes Dev       Date:  2003-09-15       Impact factor: 11.361

5.  The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein.

Authors:  F Martin; A Schaller; S Eglite; D Schümperli; B Müller
Journal:  EMBO J       Date:  1997-02-17       Impact factor: 11.598

6.  Compensatory mutations suggest that base-pairing with a small nuclear RNA is required to form the 3' end of H3 messenger RNA.

Authors:  F Schaufele; G M Gilmartin; W Bannwarth; M L Birnstiel
Journal:  Nature       Date:  1986 Oct 30-Nov 5       Impact factor: 49.962

7.  The C-terminal RG dipeptide repeats of the spliceosomal Sm proteins D1 and D3 contain symmetrical dimethylarginines, which form a major B-cell epitope for anti-Sm autoantibodies.

Authors:  H Brahms; J Raymackers; A Union; F de Keyser; L Meheus; R Lührmann
Journal:  J Biol Chem       Date:  2000-06-02       Impact factor: 5.157

8.  Stem-loop binding protein facilitates 3'-end formation by stabilizing U7 snRNP binding to histone pre-mRNA.

Authors:  Z Dominski; L X Zheng; R Sanchez; W F Marzluff
Journal:  Mol Cell Biol       Date:  1999-05       Impact factor: 4.272

Review 9.  Formation of the 3' end of histone mRNA.

Authors:  Z Dominski; W F Marzluff
Journal:  Gene       Date:  1999-10-18       Impact factor: 3.688

10.  Variable effects of the conserved RNA hairpin element upon 3' end processing of histone pre-mRNA in vitro.

Authors:  A Streit; T W Koning; D Soldati; L Melin; D Schümperli
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971

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  14 in total

1.  Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP.

Authors:  Judith A Erkmann; Ricardo Sànchez; Nathalie Treichel; William F Marzluff; Ulrike Kutay
Journal:  RNA       Date:  2005-01       Impact factor: 4.942

Review 2.  Formation of the 3' end of histone mRNA: getting closer to the end.

Authors:  Zbigniew Dominski; William F Marzluff
Journal:  Gene       Date:  2007-05-04       Impact factor: 3.688

3.  Evolutionary patterns of non-coding RNAs.

Authors:  Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

4.  Differences and similarities between Drosophila and mammalian 3' end processing of histone pre-mRNAs.

Authors:  Zbigniew Dominski; Xiao-Cui Yang; Mathew Purdy; William F Marzluff
Journal:  RNA       Date:  2005-10-26       Impact factor: 4.942

5.  Interaction between FLASH and Lsm11 is essential for histone pre-mRNA processing in vivo in Drosophila.

Authors:  Brandon D Burch; Ashley C Godfrey; Pamela Y Gasdaska; Harmony R Salzler; Robert J Duronio; William F Marzluff; Zbigniew Dominski
Journal:  RNA       Date:  2011-04-27       Impact factor: 4.942

6.  A sequence in the Drosophila H3-H4 Promoter triggers histone locus body assembly and biosynthesis of replication-coupled histone mRNAs.

Authors:  Harmony R Salzler; Deirdre C Tatomer; Pamela Y Malek; Stephen L McDaniel; Anna N Orlando; William F Marzluff; Robert J Duronio
Journal:  Dev Cell       Date:  2013-03-25       Impact factor: 12.270

7.  The Drosophila U7 snRNP proteins Lsm10 and Lsm11 are required for histone pre-mRNA processing and play an essential role in development.

Authors:  Ashley C Godfrey; Anne E White; Deirdre C Tatomer; William F Marzluff; Robert J Duronio
Journal:  RNA       Date:  2009-07-20       Impact factor: 4.942

8.  U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis.

Authors:  Ashley C Godfrey; Jeremy M Kupsco; Brandon D Burch; Ryan M Zimmerman; Zbigniew Dominski; William F Marzluff; Robert J Duronio
Journal:  RNA       Date:  2006-03       Impact factor: 4.942

9.  The 68 kDa subunit of mammalian cleavage factor I interacts with the U7 small nuclear ribonucleoprotein and participates in 3'-end processing of animal histone mRNAs.

Authors:  Marc-David Ruepp; Silvia Vivarelli; Ramesh S Pillai; Nicole Kleinschmidt; Teldja N Azzouz; Silvia M L Barabino; Daniel Schümperli
Journal:  Nucleic Acids Res       Date:  2010-07-15       Impact factor: 16.971

10.  The Cellular Processing Capacity Limits the Amounts of Chimeric U7 snRNA Available for Antisense Delivery.

Authors:  Agathe Eckenfelder; Julie Tordo; Arran Babbs; Kay E Davies; Aurélie Goyenvalle; Olivier Danos
Journal:  Mol Ther Nucleic Acids       Date:  2012-06-26       Impact factor: 10.183

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