Literature DB >> 14623099

Relationship between intramolecular hydrogen bonding and solvent accessibility of side-chain donors and acceptors in proteins.

Alexander V Efimov1, Evgenii V Brazhnikov.   

Abstract

This study shows that intramolecular hydrogen bonding in proteins depends on the accessibility of donors and acceptors to water molecules. The frequency of occurrence of H-bonded side chains in proteins is inversely proportional to the solvent accessibility of their donors and acceptors. Estimates of the notional free energy of hydrogen bonding suggest that intramolecular hydrogen-bonding interactions of buried and half-buried donors and acceptors can contribute favorably to the stability of a protein, whereas those of solvent-exposed polar atoms become less favorable or unfavorable.

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Year:  2003        PMID: 14623099     DOI: 10.1016/s0014-5793(03)01189-x

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  15 in total

1.  H-bonding in protein hydration revisited.

Authors:  Michael Petukhov; Georgy Rychkov; Leonid Firsov; Luis Serrano
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

2.  An antibody as surrogate receptor reveals determinants of activity of an innate immune peptide antibiotic.

Authors:  Suvendu Lomash; Sushma Nagpal; Dinakar M Salunke
Journal:  J Biol Chem       Date:  2010-09-13       Impact factor: 5.157

3.  Prediction of side-chain conformations on protein surfaces.

Authors:  Zhexin Xiang; Peter J Steinbach; Matthew P Jacobson; Richard A Friesner; Barry Honig
Journal:  Proteins       Date:  2007-03-01

4.  Nonadditivity in conformational entropy upon molecular rigidification reveals a universal mechanism affecting folding cooperativity.

Authors:  Oleg K Vorov; Dennis R Livesay; Donald J Jacobs
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

5.  Influence of PEGylation on the Strength of Protein Surface Salt Bridges.

Authors:  Qiang Xiao; Steven R E Draper; Mason S Smith; Nathaniel Brown; Natalie A B Pugmire; Dallin S Ashton; Anthony J Carter; Eliza E K Lawrence; Joshua L Price
Journal:  ACS Chem Biol       Date:  2019-06-24       Impact factor: 5.100

6.  Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

Authors:  Robert McCoy Vernon; Paul Andrew Chong; Brian Tsang; Tae Hun Kim; Alaji Bah; Patrick Farber; Hong Lin; Julie Deborah Forman-Kay
Journal:  Elife       Date:  2018-02-09       Impact factor: 8.140

7.  Tuning Radical Relay Residues by Proton Management Rescues Protein Electron Hopping.

Authors:  Estella F Yee; Boris Dzikovski; Brian R Crane
Journal:  J Am Chem Soc       Date:  2019-10-28       Impact factor: 15.419

8.  Grifonin-1: a small HIV-1 entry inhibitor derived from the algal lectin, Griffithsin.

Authors:  Ewa D Micewicz; Amy L Cole; Chun-Ling Jung; Hai Luong; Martin L Phillips; Pratikhya Pratikhya; Shantanu Sharma; Alan J Waring; Alexander M Cole; Piotr Ruchala
Journal:  PLoS One       Date:  2010-12-16       Impact factor: 3.240

9.  Computational insights of K1444N substitution in GAP-related domain of NF1 gene associated with neurofibromatosis type 1 disease: a molecular modeling and dynamics approach.

Authors:  Ashish Kumar Agrahari; Meghana Muskan; C George Priya Doss; R Siva; Hatem Zayed
Journal:  Metab Brain Dis       Date:  2018-05-27       Impact factor: 3.584

Review 10.  A medicinal chemist's guide to molecular interactions.

Authors:  Caterina Bissantz; Bernd Kuhn; Martin Stahl
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

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