Literature DB >> 14623072

Are non-functional, unfolded proteins ('junk proteins') common in the genome?

Simon C Lovell1.   

Abstract

It has recently been shown that many proteins are unfolded in their functional state. In addition, a large number of stretches of protein sequences are predicted to be unfolded. It has been argued that the high frequency of occurrence of these predicted unfolded sequences indicates that the majority of these sequences must also be functional. These sequences tend to be of low complexity. It is well established that certain types of low-complexity sequences are genetically unstable, and are prone to expand in the genome. It is possible, therefore, that in addition to these well-characterised functional unfolded proteins, there are a large number of unfolded proteins that are non-functional. Analogous to 'junk DNA' these protein sequences may arise due to physical characteristics of DNA. Their high frequency may reflect, therefore, the high probability of expansion in the genome. Such 'junk proteins' would not be advantageous, and may be mildly deleterious to the cell.

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Year:  2003        PMID: 14623072     DOI: 10.1016/s0014-5793(03)01223-7

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  11 in total

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8.  Comparative analysis of low complexity regions in Plasmodia.

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9.  PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.

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Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

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Authors:  Michelle Simon; John M Hancock
Journal:  Genome Biol       Date:  2009-06-01       Impact factor: 13.583

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