Literature DB >> 14616118

Allergen databases.

V Brusic1, M Millot, N Petrovsky, S M Gendel, O Gigonzac, S J Stelman.   

Abstract

Allergies represent a significant medical and industrial problem. Molecular and clinical data on allergens are growing exponentially and in this article we have reviewed nine specialized allergen databases and identified data sources related to protein allergens contained in general purpose molecular databases. An analysis of allergens contained in public databases indicates a high level of redundancy of entries and a relatively low coverage of allergens by individual databases. From this analysis we identify current database needs for allergy research and, in particular, highlight the need for a centralized reference allergen database.

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Year:  2003        PMID: 14616118     DOI: 10.1034/j.1398-9995.2003.00248.x

Source DB:  PubMed          Journal:  Allergy        ISSN: 0105-4538            Impact factor:   13.146


  9 in total

1.  AllerML: markup language for allergens.

Authors:  Ovidiu Ivanciuc; Steven M Gendel; Trevor D Power; Catherine H Schein; Werner Braun
Journal:  Regul Toxicol Pharmacol       Date:  2011-03-21       Impact factor: 3.271

Review 2.  Bioinformatics approaches to classifying allergens and predicting cross-reactivity.

Authors:  Catherine H Schein; Ovidiu Ivanciuc; Werner Braun
Journal:  Immunol Allergy Clin North Am       Date:  2007-02       Impact factor: 3.479

Review 3.  Structural characterization of pollen allergens.

Authors:  Petra Verdino
Journal:  Clin Rev Allergy Immunol       Date:  2006-04       Impact factor: 8.667

4.  An Allergen Portrait Gallery: Representative Structures and an Overview of IgE Binding Surfaces.

Authors:  Catherine H Schein; Ovidiu Ivanciuc; Terumi Midoro-Horiuti; Randall M Goldblum; Werner Braun
Journal:  Bioinform Biol Insights       Date:  2010-10-11

Review 5.  Structural analysis of linear and conformational epitopes of allergens.

Authors:  Ovidiu Ivanciuc; Catherine H Schein; Tzintzuni Garcia; Numan Oezguen; Surendra S Negi; Werner Braun
Journal:  Regul Toxicol Pharmacol       Date:  2008-12-14       Impact factor: 3.271

6.  Allergen Atlas: a comprehensive knowledge center and analysis resource for allergen information.

Authors:  Joo Chuan Tong; Shen Jean Lim; Hon Cheng Muh; Fook Tim Chew; Martti T Tammi
Journal:  Bioinformatics       Date:  2009-02-11       Impact factor: 6.937

7.  Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning.

Authors:  D Soeria-Atmadja; T Lundell; M G Gustafsson; U Hammerling
Journal:  Nucleic Acids Res       Date:  2006-08-23       Impact factor: 16.971

8.  Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses.

Authors:  Olivo Miotto; Tin Wee Tan; Vladimir Brusic
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

9.  Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis.

Authors:  Olivo Miotto; At Heiny; Tin Wee Tan; J Thomas August; Vladimir Brusic
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

  9 in total

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