Literature DB >> 14607095

Zea mays ontology--a database of international terms.

P Leszek D Vincent1, Edward H Coe, Mary L Polacco.   

Abstract

Data retrieval, comprehension and sharing within and between plant-based databases are essential to exploit comparative genomic information to elucidate functional aspects of plant biology and to conduct studies of synteny and homology. However, the functionality is often hampered by the variability of terms used to describe comparable objects. The Zea mays Plant Structure Ontology database is designed to overcome this problem via the provision of a controlled vocabulary that facilitates knowledge sharing. It comprises international botanical terms, references, synonyms, and phylogenetic information and is open-source.

Entities:  

Mesh:

Year:  2003        PMID: 14607095     DOI: 10.1016/j.tplants.2003.09.014

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  7 in total

1.  Development of a controlled vocabulary and software application to analyze fruit shape variation in tomato and other plant species.

Authors:  Marin Talbot Brewer; Lixin Lang; Kikuo Fujimura; Nancy Dujmovic; Simon Gray; Esther van der Knaap
Journal:  Plant Physiol       Date:  2006-05       Impact factor: 8.340

2.  The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.

Authors:  Katica Ilic; Elizabeth A Kellogg; Pankaj Jaiswal; Felipe Zapata; Peter F Stevens; Leszek P Vincent; Shulamit Avraham; Leonore Reiser; Anuradha Pujar; Martin M Sachs; Noah T Whitman; Susan R McCouch; Mary L Schaeffer; Doreen H Ware; Lincoln D Stein; Seung Y Rhee
Journal:  Plant Physiol       Date:  2006-12-01       Impact factor: 8.340

3.  Ontologies as integrative tools for plant science.

Authors:  Ramona L Walls; Balaji Athreya; Laurel Cooper; Justin Elser; Maria A Gandolfo; Pankaj Jaiswal; Christopher J Mungall; Justin Preece; Stefan Rensing; Barry Smith; Dennis W Stevenson
Journal:  Am J Bot       Date:  2012-07-30       Impact factor: 3.844

4.  Computable visually observed phenotype ontological framework for plants.

Authors:  Jaturon Harnsomburana; Jason M Green; Adrian S Barb; Mary Schaeffer; Leszek Vincent; Chi-Ren Shyu
Journal:  BMC Bioinformatics       Date:  2011-06-24       Impact factor: 3.169

5.  Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.

Authors:  Pankaj Jaiswal; Shulamit Avraham; Katica Ilic; Elizabeth A Kellogg; Susan McCouch; Anuradha Pujar; Leonore Reiser; Seung Y Rhee; Martin M Sachs; Mary Schaeffer; Lincoln Stein; Peter Stevens; Leszek Vincent; Doreen Ware; Felipe Zapata
Journal:  Comp Funct Genomics       Date:  2005

6.  The plant ontology as a tool for comparative plant anatomy and genomic analyses.

Authors:  Laurel Cooper; Ramona L Walls; Justin Elser; Maria A Gandolfo; Dennis W Stevenson; Barry Smith; Justin Preece; Balaji Athreya; Christopher J Mungall; Stefan Rensing; Manuel Hiss; Daniel Lang; Ralf Reski; Tanya Z Berardini; Donghui Li; Eva Huala; Mary Schaeffer; Naama Menda; Elizabeth Arnaud; Rosemary Shrestha; Yukiko Yamazaki; Pankaj Jaiswal
Journal:  Plant Cell Physiol       Date:  2012-12-05       Impact factor: 4.927

7.  The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.

Authors:  Shulamit Avraham; Chih-Wei Tung; Katica Ilic; Pankaj Jaiswal; Elizabeth A Kellogg; Susan McCouch; Anuradha Pujar; Leonore Reiser; Seung Y Rhee; Martin M Sachs; Mary Schaeffer; Lincoln Stein; Peter Stevens; Leszek Vincent; Felipe Zapata; Doreen Ware
Journal:  Nucleic Acids Res       Date:  2008-01       Impact factor: 16.971

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.