Literature DB >> 14604521

Order, disorder, and flexibility: prediction from protein sequence.

Lilia M Iakoucheva1, A Keith Dunker.   

Abstract

The new predictor of disordered protein regions (disEMBL) introduced in this issue of Structure represents a computational tool developed to aid structural biologists in the design of protein constructs that avoid disordered protein regions in order to increase the success rate of structure determination.

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Year:  2003        PMID： 14604521     DOI： 10.1016/j.str.2003.10.009

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  12 in total

1.  Molecular dimension explored in evolution to promote proteomic complexity.

Authors:  Ariel Fernández; R Stephen Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-03       Impact factor: 11.205

2.  Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein.

Authors:  Gretchen Meinke; Chukwudi Ezeokonkwo; Paul Balbo; Walter Stafford; Claire Moore; Andrew Bohm
Journal:  Biochemistry       Date:  2008-06-07       Impact factor: 3.162

3.  Protein packing defects "heat up" interfacial water.

Authors:  María Belén Sierra; Sebastián R Accordino; J Ariel Rodriguez-Fris; Marcela A Morini; Gustavo A Appignanesi; Ariel Fernández Stigliano
Journal:  Eur Phys J E Soft Matter       Date:  2013-06-25       Impact factor: 1.890

4.  Expanding the proteome: disordered and alternatively folded proteins.

Authors:  H Jane Dyson
Journal:  Q Rev Biophys       Date:  2011-07-01       Impact factor: 5.318

5.  Unique physical properties and interactions of the domains of methylated DNA binding protein 2.

Authors:  Rajarshi P Ghosh; Tatiana Nikitina; Rachel A Horowitz-Scherer; Lila M Gierasch; Vladimir N Uversky; Kristopher Hite; Jeffrey C Hansen; Christopher L Woodcock
Journal:  Biochemistry       Date:  2010-05-25       Impact factor: 3.162

6.  Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms.

Authors:  Pedro R Romero; Saima Zaidi; Ya Yin Fang; Vladimir N Uversky; Predrag Radivojac; Christopher J Oldfield; Marc S Cortese; Megan Sickmeier; Tanguy LeGall; Zoran Obradovic; A Keith Dunker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-22       Impact factor: 11.205

7.  The identification and functional characterization of WxL proteins from Enterococcus faecium reveal surface proteins involved in extracellular matrix interactions.

Authors:  Jessica R Galloway-Peña; Xiaowen Liang; Kavindra V Singh; Puja Yadav; Chungyu Chang; Sabina Leanti La Rosa; Samuel Shelburne; Hung Ton-That; Magnus Höök; Barbara E Murray
Journal:  J Bacteriol       Date:  2014-12-15       Impact factor: 3.490

8.  Effects of disulfide bond formation and protein helicity on the aggregation of activating transcription factor 5.

Authors:  Natalie A Ciaccio; Jennifer S Laurence
Journal:  Mol Pharm       Date:  2009 Jul-Aug       Impact factor: 4.939

9.  Early-stage folding in proteins (in silico) sequence-to-structure relation.

Authors:  Michał Brylinski; Leszek Konieczny; Patryk Czerwonko; Wiktor Jurkowski; Irena Roterman
Journal:  J Biomed Biotechnol       Date:  2005-06-30

10.  Inferring function using patterns of native disorder in proteins.

Authors:  Anna Lobley; Mark B Swindells; Christine A Orengo; David T Jones
Journal:  PLoS Comput Biol       Date:  2007-07-03       Impact factor: 4.475
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