Literature DB >> 14596642

In vivo multi-tissue corticosteroid microarray time series available online at Public Expression Profile Resource (PEPR).

Richard R Almon1, Josephine Chen, Grayson Snyder, Debra C DuBois, William J Jusko, Eric P Hoffman.   

Abstract

Gene microarrays are becoming a key tool for the analysis of changes in gene expression in a variety of conditions. Use of microarrays to analyze drug responses has mainly been restricted to comparing treated versus untreated samples at a few time points. Such data do not permit the use of another important tool, pharmacokinetic/pharmacodynamic (PK/PD) modeling. Such modeling requires the simultaneous analysis of pharmacokinetic data along with time series data on dynamic responses. This report describes data obtained from two extended microarray time series (rat liver and skeletal muscle) for the in vivo responses to a single bolus dose of methylprednisolone that are uniquely available online in a single gene query format. Use of these data does not require any a priori knowledge or software normally necessary for the analysis of microarray data. Since the pharmacokinetic data and receptor model have been published, the results are amenable to PK/PD and pharmacogenomic evaluation.

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Year:  2003        PMID: 14596642     DOI: 10.1517/phgs.4.6.791.22816

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  11 in total

1.  The genomic response of skeletal muscle to methylprednisolone using microarrays: tailoring data mining to the structure of the pharmacogenomic time series.

Authors:  Richard R Almon; Debra C DuBois; William H Piel; William J Jusko
Journal:  Pharmacogenomics       Date:  2004-07       Impact factor: 2.533

2.  Modeling of corticosteroid effects on hepatic low-density lipoprotein receptors and plasma lipid dynamics in rats.

Authors:  Anasuya Hazra; Nancy A Pyszczynski; Debra C DuBois; Richard R Almon; William J Jusko
Journal:  Pharm Res       Date:  2007-08-03       Impact factor: 4.200

3.  Pharmacogenomic responses of rat liver to methylprednisolone: an approach to mining a rich microarray time series.

Authors:  Richard R Almon; Debra C Dubois; Jin Y Jin; William J Jusko
Journal:  AAPS J       Date:  2005-08-18       Impact factor: 4.009

4.  Corticosteroid-regulated genes in rat kidney: mining time series array data.

Authors:  Richard R Almon; William Lai; Debra C DuBois; William J Jusko
Journal:  Am J Physiol Endocrinol Metab       Date:  2005-06-28       Impact factor: 4.310

5.  Application of scaling factors in simultaneous modeling of microarray data from diverse chips.

Authors:  Zhenling Yao; Baiteng Zhao; Eric P Hoffman; Svetlana Ghimbovschi; Debra C DuBois; Richard R Almon; William J Jusko
Journal:  Pharm Res       Date:  2007-02-21       Impact factor: 4.200

6.  Functional proteomic analysis of corticosteroid pharmacodynamics in rat liver: Relationship to hepatic stress, signaling, energy regulation, and drug metabolism.

Authors:  Vivaswath S Ayyar; Richard R Almon; Debra C DuBois; Siddharth Sukumaran; Jun Qu; William J Jusko
Journal:  J Proteomics       Date:  2017-03-14       Impact factor: 4.044

7.  Mathematical modeling of corticosteroid pharmacogenomics in rat muscle following acute and chronic methylprednisolone dosing.

Authors:  Zhenling Yao; Eric P Hoffman; Svetlana Ghimbovschi; Debra C Dubois; Richard R Almon; William J Jusko
Journal:  Mol Pharm       Date:  2008-02-14       Impact factor: 4.939

8.  Glucocorticoid efficacy in asthma: is improved tissue remodeling upstream of anti-inflammation.

Authors:  Robert J Freishtat; Kanneboyina Nagaraju; William Jusko; Eric P Hoffman
Journal:  J Investig Med       Date:  2010-01       Impact factor: 2.895

9.  Pharmacodynamic/pharmacogenomic modeling of insulin resistance genes in rat muscle after methylprednisolone treatment: exploring regulatory signaling cascades.

Authors:  Zhenling Yao; Eric P Hoffman; Svetlana Ghimbovschi; Debra C DuBois; Richard R Almon; William J Jusko
Journal:  Gene Regul Syst Bio       Date:  2008-04-23

10.  Pharmacodynamic modeling of acute and chronic effects of methylprednisolone on hepatic urea cycle genes in rats.

Authors:  Anasuya Hazra; Debra C DuBois; Richard R Almon; Grayson H Snyder; William J Jusko
Journal:  Gene Regul Syst Bio       Date:  2008-02-14
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