Literature DB >> 14594727

RankViaContact: ranking and visualization of amino acid contacts.

Bairong Shen1, Mauno Vihinen.   

Abstract

SUMMARY: RankViaContact is a web service for calculation of residue-residue contact energies in proteins based on a coarse-grained model, and for visualization of interactions. The service provides information about ranked contact energies of residues, coordination numbers and the relative solvent accessibility of selected residues, as well as sequence and structure information. The program can be used to design stabilizing mutations, to analyze residue-residue contacts and to study the consequences of mutations. AVAILABILITY: http://bioinf.uta.fi/Rank.htm.

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Year:  2003        PMID: 14594727     DOI: 10.1093/bioinformatics/btg293

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

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Journal:  Precis Clin Med       Date:  2021-04-16

2.  Inflammatory bowel disease and mutations affecting the interleukin-10 receptor.

Authors:  Erik-Oliver Glocker; Daniel Kotlarz; Kaan Boztug; E Michael Gertz; Alejandro A Schäffer; Fatih Noyan; Mario Perro; Jana Diestelhorst; Anna Allroth; Dhaarini Murugan; Nadine Hätscher; Dietmar Pfeifer; Karl-Walter Sykora; Martin Sauer; Hans Kreipe; Martin Lacher; Rainer Nustede; Cristina Woellner; Ulrich Baumann; Ulrich Salzer; Sibylle Koletzko; Neil Shah; Anthony W Segal; Axel Sauerbrey; Stephan Buderus; Scott B Snapper; Bodo Grimbacher; Christoph Klein
Journal:  N Engl J Med       Date:  2009-11-04       Impact factor: 91.245

3.  Molecular screening of the CYP4V2 gene in Bietti crystalline dystrophy that is associated with choroidal neovascularization.

Authors:  Gandra Mamatha; Vetrivel Umashankar; Nachiappan Kasinathan; Tandava Krishnan; Ravichandran Sathyabaarathi; Thirumalai Karthiyayini; John Amali; Chetan Rao; Jagadeesan Madhavan
Journal:  Mol Vis       Date:  2011-07-20       Impact factor: 2.367

4.  Spectrum of disease-causing mutations in protein secondary structures.

Authors:  Sofia Khan; Mauno Vihinen
Journal:  BMC Struct Biol       Date:  2007-08-29

5.  SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment.

Authors:  Vladimir Sobolev; Eran Eyal; Sergey Gerzon; Vladimir Potapov; Mariana Babor; Jaime Prilusky; Marvin Edelman
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

6.  NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database.

Authors:  Yang Yang; Chen Xu; Xingyun Liu; Chao Xu; Yuanyuan Zhang; Li Shen; Mauno Vihinen; Bairong Shen
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

7.  ANCA: A Web Server for Amino Acid Networks Construction and Analysis.

Authors:  Wenying Yan; Chunjiang Yu; Jiajia Chen; Jianhong Zhou; Bairong Shen
Journal:  Front Mol Biosci       Date:  2020-11-19
  7 in total

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