Literature DB >> 14594726

GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

Luis A Martínez-Cruz1, Angel Rubio, María L Martínez-Chantar, Alberto Labarga, Isabel Barrio, Adam Podhorski, Victor Segura, José L Sevilla Campo, Matías A Avila, Jose M Mato.   

Abstract

SUMMARY: Genomic Analysis and Rapid Biological ANnotation (GARBAN) is a new tool that provides an integrated framework to analyze simultaneously and compare multiple data sets derived from microarray or proteomic experiments. It carries out automated classifications of genes or proteins according to the criteria of the Gene Ontology Consortium at a level of depth defined by the user. Additionally, it performs clustering analysis of all sets based on functional categories or on differential expression levels. GARBAN also provides graphical representations of the biological pathways in which all the genes/proteins participate. AVAILABILITY: http://garban.tecnun.es.

Mesh:

Year:  2003        PMID: 14594726     DOI: 10.1093/bioinformatics/btg291

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

1.  Orchestrated downregulation of genes involved in oxidative metabolic pathways in obese vs. lean high-fat young male consumers.

Authors:  M Pilar Marrades; Pedro González-Muniesa; David Arteta; J Alfredo Martínez; Maria Jesus Moreno-Aliaga
Journal:  J Physiol Biochem       Date:  2010-09-30       Impact factor: 4.158

Review 2.  Toward a complete in silico, multi-layered embryonic stem cell regulatory network.

Authors:  Huilei Xu; Christoph Schaniel; Ihor R Lemischka; Avi Ma'ayan
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

3.  A dysregulation in CES1, APOE and other lipid metabolism-related genes is associated to cardiovascular risk factors linked to obesity.

Authors:  M Pilar Marrades; Pedro González-Muniesa; J Alfredo Martínez; María J Moreno-Aliaga
Journal:  Obes Facts       Date:  2010-10-15       Impact factor: 3.942

Review 4.  Ten years of pathway analysis: current approaches and outstanding challenges.

Authors:  Purvesh Khatri; Marina Sirota; Atul J Butte
Journal:  PLoS Comput Biol       Date:  2012-02-23       Impact factor: 4.475

5.  GeneTools--application for functional annotation and statistical hypothesis testing.

Authors:  Vidar Beisvag; Frode K R Jünge; Hallgeir Bergum; Lars Jølsum; Stian Lydersen; Clara-Cecilie Günther; Heri Ramampiaro; Mette Langaas; Arne K Sandvik; Astrid Laegreid
Journal:  BMC Bioinformatics       Date:  2006-10-24       Impact factor: 3.169

6.  Linking microarray reporters with protein functions.

Authors:  Stan Gaj; Arie van Erk; Rachel I M van Haaften; Chris T A Evelo
Journal:  BMC Bioinformatics       Date:  2007-09-26       Impact factor: 3.169

Review 7.  Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future Challenges.

Authors:  Samarendra Das; Craig J McClain; Shesh N Rai
Journal:  Entropy (Basel)       Date:  2020-04-10       Impact factor: 2.524

8.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.