Literature DB >> 14594725

Pathway studio--the analysis and navigation of molecular networks.

Alexander Nikitin1, Sergei Egorov, Nikolai Daraselia, Ilya Mazo.   

Abstract

SUMMARY: PathwayAssist is a software application developed for navigation and analysis of biological pathways, gene regulation networks and protein interaction maps. It comes with the built-in natural language processing module MedScan and the comprehensive database describing more than 100 000 events of regulation, interaction and modification between proteins, cell processes and small molecules. AVAILABILITY: PathwayAssist is available for commercial licensing from Ariadne Genomics, Inc. The light version with limited functionality will be available for free for academic users at www.ariadnegenomics.com/downloads/.

Mesh：

Year:  2003        PMID： 14594725     DOI： 10.1093/bioinformatics/btg290

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  243 in total

1.  An unbiased in vivo functional genomics screening approach in mice identifies novel tumor cell-based regulators of immune rejection.

Authors:  Casey W Shuptrine; Reham Ajina; Elana J Fertig; Sandra A Jablonski; H Kim Lyerly; Zachary C Hartman; Louis M Weiner
Journal:  Cancer Immunol Immunother       Date:  2017-08-02       Impact factor: 6.968

2.  Methoxychlor affects multiple hormone signaling pathways in the largemouth bass (Micropterus salmoides) liver.

Authors:  Christopher J Martyniuk; Daniel J Spade; Jason L Blum; Kevin J Kroll; Nancy D Denslow
Journal:  Aquat Toxicol       Date:  2010-12-13       Impact factor: 4.964

Review 3.  Identification of aberrant pathways and network activities from high-throughput data.

Authors:  Jinlian Wang; Yuji Zhang; Catalin Marian; Habtom W Ressom
Journal:  Brief Bioinform       Date:  2012-01-27       Impact factor: 11.622

4.  Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis.

Authors:  Charlotte Angerstein; Michael Hecker; Brigitte Katrin Paap; Dirk Koczan; Madhan Thamilarasan; Hans-Jürgen Thiesen; Uwe Klaus Zettl
Journal:  Mol Neurobiol       Date:  2012-05-02       Impact factor: 5.590

5.  Effects of acute dieldrin exposure on neurotransmitters and global gene transcription in largemouth bass (Micropterus salmoides) hypothalamus.

Authors:  Christopher J Martyniuk; April Feswick; Daniel J Spade; Kevin J Kroll; David S Barber; Nancy D Denslow
Journal:  Neurotoxicology       Date:  2010-05-11       Impact factor: 4.294

6.  Computational tools for the interactive exploration of proteomic and structural data.

Authors:  John H Morris; Elaine C Meng; Thomas E Ferrin
Journal:  Mol Cell Proteomics       Date:  2010-06-04       Impact factor: 5.911

7.  Immortalized liver endothelial cells: a cell culture model for studies of motility and angiogenesis.

Authors:  Robert C Huebert; Kumaravelu Jagavelu; Ann F Liebl; Bing Q Huang; Patrick L Splinter; Nicholas F LaRusso; Raul A Urrutia; Vijay H Shah
Journal:  Lab Invest       Date:  2010-07-19       Impact factor: 5.662

8.  Molecular characterization of Brassica napus stress related transcription factors, BnMYB44 and BnVIP1, selected based on comparative analysis of Arabidopsis thaliana and Eutrema salsugineum transcriptomes.

Authors:  Roohollah Shamloo-Dashtpagerdi; Hooman Razi; Esmaeil Ebrahimie; Ali Niazi
Journal:  Mol Biol Rep       Date:  2018-07-23       Impact factor: 2.316

9.  Identification and characterization of a 66-68-kDa protein as a methotrexate-binding protein in murine leukemia L1210 cells.

Authors:  Tuoen Liu; Allison Dean; Saint Ashwini; Peter P Sheridan; Alok Bhushan; James C K Lai; Shousong Cao; Christopher K Daniels
Journal:  Cell Stress Chaperones       Date:  2012-10-23       Impact factor: 3.667

10.  Effect of Human Genetic Variability on Gene Expression in Dorsal Root Ganglia and Association with Pain Phenotypes.

Authors:  Marc Parisien; Samar Khoury; Anne-Julie Chabot-Doré; Susana G Sotocinal; Gary D Slade; Shad B Smith; Roger B Fillingim; Richard Ohrbach; Joel D Greenspan; William Maixner; Jeffrey S Mogil; Inna Belfer; Luda Diatchenko
Journal:  Cell Rep       Date:  2017-05-30       Impact factor: 9.423
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