Literature DB >> 14585610

Sequencing the Oxytricha trifallax macronuclear genome: a pilot project.

Thomas G Doak1, Andre R O Cavalcanti, Nicholas A Stover, Diane M Dunn, Robert Weiss, Glenn Herrick, Laura F Landweber.   

Abstract

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Year:  2003        PMID： 14585610     DOI： 10.1016/j.tig.2003.09.013

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


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  13 in total

1.  The evolutionary origin of a complex scrambled gene.

Authors:  Wei-Jen Chang; Paul D Bryson; Han Liang; Mann Kyoon Shin; Laura F Landweber
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-10       Impact factor: 11.205

2.  Interconversion of germline-limited and somatic DNA in a scrambled gene.

Authors:  Matthias Möllenbeck; Andre R O Cavalcanti; Franziska Jönsson; Hans J Lipps; Laura F Landweber
Journal:  J Mol Evol       Date:  2006-06-03       Impact factor: 2.395

3.  Gene structure of the ciliate Sterkiella histriomuscorum based on a combined analysis of DNA and cDNA sequences from 21 macronuclear chromosomes.

Authors:  Rachel Lescasse; Tie Yang; Jeanine Grisvard; Eduardo Villalobo; Clara Moch; Anne Baroin-Tourancheau; Loïc Morin
Journal:  Chromosoma       Date:  2005-11-12       Impact factor: 4.316

4.  Characterization and taxonomic validity of the ciliate Oxytricha trifallax (Class Spirotrichea) based on multiple gene sequences: limitations in identifying genera solely by morphology.

Authors:  Stephen D Zoller; Robert L Hammersmith; Estienne C Swart; Brian P Higgins; Thomas G Doak; Glenn Herrick; Laura F Landweber
Journal:  Protist       Date:  2012-02-09

5.  Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project.

Authors:  Andre R O Cavalcanti; Nicholas A Stover; Lorenzo Orecchia; Thomas G Doak; Laura F Landweber
Journal:  Chromosoma       Date:  2004-07-16       Impact factor: 4.316

6.  Conserved linkage of two genes on the same macronuclear chromosome in spirotrichous ciliates.

Authors:  Craig P McFarland; Wei-Jen Chang; Shiuhyang Kuo; Laura F Landweber
Journal:  Chromosoma       Date:  2006-03-07       Impact factor: 4.316

7.  Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.

Authors:  Seolkyoung Jung; Estienne C Swart; Patrick J Minx; Vincent Magrini; Elaine R Mardis; Laura F Landweber; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2011-06-28       Impact factor: 16.971

8.  Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control.

Authors:  Robert S Coyne; Linda Hannick; Dhanasekaran Shanmugam; Jessica B Hostetler; Daniel Brami; Vinita S Joardar; Justin Johnson; Diana Radune; Irtisha Singh; Jonathan H Badger; Ujjwal Kumar; Milton Saier; Yufeng Wang; Hong Cai; Jianying Gu; Michael W Mather; Akhil B Vaidya; David E Wilkes; Vidyalakshmi Rajagopalan; David J Asai; Chad G Pearson; Robert C Findly; Harry W Dickerson; Martin Wu; Cindy Martens; Yves Van de Peer; David S Roos; Donna M Cassidy-Hanley; Theodore G Clark
Journal:  Genome Biol       Date:  2011-10-17       Impact factor: 13.583

9.  Extension of Lander-Waterman theory for sequencing filtered DNA libraries.

Authors:  Michael C Wendl; W Brad Barbazuk
Journal:  BMC Bioinformatics       Date:  2005-10-10       Impact factor: 3.169

10.  Macronuclear genome structure of the ciliate Nyctotherus ovalis: single-gene chromosomes and tiny introns.

Authors:  Guénola Ricard; Rob M de Graaf; Bas E Dutilh; I Duarte; Theo A van Alen; Angela Ham van Hoek; Brigitte Boxma; Georg W M van der Staay; Seung Yeo Moon-van der Staay; Wei-Jen Chang; Laura F Landweber; Johannes H P Hackstein; Martijn A Huynen
Journal:  BMC Genomics       Date:  2008-12-05       Impact factor: 3.969
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