Literature DB >> 14582517

Inferring gene networks from time series microarray data using dynamic Bayesian networks.

Sun Yong Kim1, Seiya Imoto, Satoru Miyano.   

Abstract

Dynamic Bayesian networks (DBNs) are considered as a promising model for inferring gene networks from time series microarray data. DBNs have overtaken Bayesian networks (BNs) as DBNs can construct cyclic regulations using time delay information. In this paper, a general framework for DBN modelling is outlined. Both discrete and continuous DBN models are constructed systematically and criteria for learning network structures are introduced from a Bayesian statistical viewpoint. This paper reviews the applications of DBNs over the past years. Real data applications for Saccharomyces cerevisiae time series gene expression data are also shown.

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Year:  2003        PMID: 14582517     DOI: 10.1093/bib/4.3.228

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  74 in total

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2.  Uncovering gene regulatory networks from time-series microarray data with variational Bayesian structural expectation maximization.

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Review 3.  Biochemical and statistical network models for systems biology.

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Journal:  Brief Bioinform       Date:  2010-01-08       Impact factor: 11.622

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Authors:  Muna Affara; Benjamin Dunmore; Christopher Savoie; Seiya Imoto; Yoshinori Tamada; Hiromitsu Araki; D Stephen Charnock-Jones; Satoru Miyano; Cristin Print
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-08-29       Impact factor: 6.237

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8.  Inferring cell cycle feedback regulation from gene expression data.

Authors:  Fulvia Ferrazzi; Felix B Engel; Erxi Wu; Annie P Moseman; Isaac S Kohane; Riccardo Bellazzi; Marco F Ramoni
Journal:  J Biomed Inform       Date:  2011-02-16       Impact factor: 6.317

9.  Model-Based Clustering With Data Correction For Removing Artifacts In Gene Expression Data.

Authors:  William Chad Young; Adrian E Raftery; Ka Yee Yeung
Journal:  Ann Appl Stat       Date:  2017-12-28       Impact factor: 2.083

10.  Grammatical Immune System Evolution for reverse engineering nonlinear dynamic Bayesian models.

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Journal:  Cancer Inform       Date:  2008-08-28
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