Literature DB >> 14580590

The thermal history of human fossils and the likelihood of successful DNA amplification.

Colin I Smith1, Andrew T Chamberlain, Michael S Riley, Chris Stringer, Matthew J Collins.   

Abstract

Recent success in the amplification of ancient DNA (aDNA) from fossil humans has led to calls for further tests to be carried out on similar material. However, there has been little systematic research on the survival of DNA in the fossil record, even though the environment of the fossil is known to be of paramount importance for the survival of biomolecules over archaeological and geological timescales. A better understanding of aDNA survival would enable research to focus on material with greater chances of successful amplification, thus preventing the unnecessary loss of material and valuable researcher time. We argue that the thermal history of a fossil is a key parameter for the survival of biomolecules. The thermal history of a number of northwest European Neanderthal cave sites is reconstructed here and they are ranked in terms of the relative likelihood of aDNA survival at the sites, under the assumption that DNA depurination is the principal mechanism of degradation. The claims of aDNA amplification from material found at Lake Mungo, Australia, are also considered in the light of the thermal history of this site.

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Year:  2003        PMID: 14580590     DOI: 10.1016/s0047-2484(03)00106-4

Source DB:  PubMed          Journal:  J Hum Evol        ISSN: 0047-2484            Impact factor:   3.895


  67 in total

1.  Evaluating the impact of post-mortem damage in ancient DNA: a theoretical approach.

Authors:  Martyna Molak; Simon Y W Ho
Journal:  J Mol Evol       Date:  2011-11-20       Impact factor: 2.395

2.  Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates.

Authors:  K Praveen Karanth; Thomas Delefosse; Berthe Rakotosamimanana; Thomas J Parsons; Anne D Yoder
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-22       Impact factor: 11.205

3.  Evaluating bacterial pathogen DNA preservation in museum osteological collections.

Authors:  Ian Barnes; Mark G Thomas
Journal:  Proc Biol Sci       Date:  2006-03-22       Impact factor: 5.349

4.  Success rates of nuclear short tandem repeat typing from different skeletal elements.

Authors:  Ana Milos; Arijana Selmanović; Lejla Smajlović; René L M Huel; Cheryl Katzmarzyk; Adi Rizvić; Thomas J Parsons
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

5.  Preservation of ancient DNA in thermally damaged archaeological bone.

Authors:  Claudio Ottoni; Hannah E C Koon; Matthew J Collins; Kirsty E H Penkman; Olga Rickards; Oliver E Craig
Journal:  Naturwissenschaften       Date:  2008-11-29

6.  Postmortem miscoding lesions in sequence analysis of human ancient mitochondrial DNA.

Authors:  Ryan Lamers; Shana Hayter; Carney D Matheson
Journal:  J Mol Evol       Date:  2008-12-06       Impact factor: 2.395

7.  Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Authors:  Ludovic Orlando; Aurélien Ginolhac; Guojie Zhang; Duane Froese; Anders Albrechtsen; Mathias Stiller; Mikkel Schubert; Enrico Cappellini; Bent Petersen; Ida Moltke; Philip L F Johnson; Matteo Fumagalli; Julia T Vilstrup; Maanasa Raghavan; Thorfinn Korneliussen; Anna-Sapfo Malaspinas; Josef Vogt; Damian Szklarczyk; Christian D Kelstrup; Jakob Vinther; Andrei Dolocan; Jesper Stenderup; Amhed M V Velazquez; James Cahill; Morten Rasmussen; Xiaoli Wang; Jiumeng Min; Grant D Zazula; Andaine Seguin-Orlando; Cecilie Mortensen; Kim Magnussen; John F Thompson; Jacobo Weinstock; Kristian Gregersen; Knut H Røed; Véra Eisenmann; Carl J Rubin; Donald C Miller; Douglas F Antczak; Mads F Bertelsen; Søren Brunak; Khaled A S Al-Rasheid; Oliver Ryder; Leif Andersson; John Mundy; Anders Krogh; M Thomas P Gilbert; Kurt Kjær; Thomas Sicheritz-Ponten; Lars Juhl Jensen; Jesper V Olsen; Michael Hofreiter; Rasmus Nielsen; Beth Shapiro; Jun Wang; Eske Willerslev
Journal:  Nature       Date:  2013-06-26       Impact factor: 49.962

8.  Revising the recent evolutionary history of equids using ancient DNA.

Authors:  Ludovic Orlando; Jessica L Metcalf; Maria T Alberdi; Miguel Telles-Antunes; Dominique Bonjean; Marcel Otte; Fabiana Martin; Véra Eisenmann; Marjan Mashkour; Flavia Morello; Jose L Prado; Rodolfo Salas-Gismondi; Bruce J Shockey; Patrick J Wrinn; Sergei K Vasil'ev; Nikolai D Ovodov; Michael I Cherry; Blair Hopwood; Dean Male; Jeremy J Austin; Catherine Hänni; Alan Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-09       Impact factor: 11.205

9.  Osteocalcin protein sequences of Neanderthals and modern primates.

Authors:  Christina M Nielsen-Marsh; Michael P Richards; Peter V Hauschka; Jane E Thomas-Oates; Erik Trinkaus; Paul B Pettitt; Ivor Karavanic; Hendrik Poinar; Matthew J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

10.  Ancient DNA provides new insights into the history of south Siberian Kurgan people.

Authors:  Christine Keyser; Caroline Bouakaze; Eric Crubézy; Valery G Nikolaev; Daniel Montagnon; Tatiana Reis; Bertrand Ludes
Journal:  Hum Genet       Date:  2009-05-16       Impact factor: 4.132

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