Literature DB >> 14575655

Thermodynamical interpretation of an adaptive walk on a Mt. Fuji-type fitness landscape: Einstein relation-like formula holds in a stochastic evolution.

Takuyo Aita1, Yuzuru Husimi.   

Abstract

We have theoretically studied the statistical properties of adaptive walks (or hill-climbing) on a Mt. Fuji-type fitness landscape in the multi-dimensional sequence space through mathematical analysis and computer simulation. The adaptive walk is characterized by the "mutation distance" d as the step-width of the walker and the "population size" N as the number of randomly generated d-fold point mutants to be screened. In addition to the fitness W, we introduced the following quantities analogous to thermodynamical concepts: "free fitness" G(W) is identical with W+T x S(W), where T is the "evolutionary temperature" T infinity square root of d/lnN and S(W) is the entropy as a function of W, and the "evolutionary force" X is identical with d(G(W)/T)/dW, that is caused by the mutation and selection pressure. It is known that a single adaptive walker rapidly climbs on the fitness landscape up to the stationary state where a "mutation-selection-random drift balance" is kept. In our interpretation, the walker tends to the maximal free fitness state, driven by the evolutionary force X. Our major findings are as follows: First, near the stationary point W*, the "climbing rate" J as the expected fitness change per generation is described by J approximately L x X with L approximately V/2, where V is the variance of fitness distribution on a local landscape. This simple relationship is analogous to the well-known Einstein relation in Brownian motion. Second, the "biological information gain" (DeltaG/T) through adaptive walk can be described by combining the Shannon's information gain (DeltaS) and the "fitness information gain" (DeltaW/T).

Mesh:

Year:  2003        PMID: 14575655     DOI: 10.1016/s0022-5193(03)00240-6

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  2 in total

1.  Experimental rugged fitness landscape in protein sequence space.

Authors:  Yuuki Hayashi; Takuyo Aita; Hitoshi Toyota; Yuzuru Husimi; Itaru Urabe; Tetsuya Yomo
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

2.  Informational complexity and functional activity of RNA structures.

Authors:  James M Carothers; Stephanie C Oestreich; Jonathan H Davis; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2004-04-28       Impact factor: 15.419

  2 in total

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