Literature DB >> 14573364

Cyanobacterial postgenomic research and systems biology.

Adam M Burja1, Srisuda Dhamwichukorn, Phillip C Wright.   

Abstract

The genomic era brought with it the capacity to unlock complex interactions in organisms and biological systems. Currently, by exploiting genomic and associated protein information through in silico analyses, postgenomic research is developing rapidly. This field, which encompasses functional genomics, structural genomics, transcriptomics, pharmacogenomics, proteomics and metabolomics, allows for a systems-wide approach to biological studies. To date, bacterial postgenomic research has focused mainly on a few representative pathogenic species, leaving the vast majority of the microbial community relatively overlooked. Amongst the under-represented microorganisms are the cyanobacteria, which are important for their beneficial natural product production, bioremediation and energy applications. Here, we highlight the current status of cyanobacterial postgenomic research and assess the potential for future metabolic engineering and "cell factory" or "microbial cell" development.

Mesh:

Year:  2003        PMID: 14573364     DOI: 10.1016/j.tibtech.2003.08.008

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  11 in total

Review 1.  Exploitation of marine algae: biogenic compounds for potential antifouling applications.

Authors:  Punyasloke Bhadury; Phillip C Wright
Journal:  Planta       Date:  2004-06-24       Impact factor: 4.116

2.  Comparative genomics of NAD biosynthesis in cyanobacteria.

Authors:  Svetlana Y Gerdes; Oleg V Kurnasov; Konstantin Shatalin; Boris Polanuyer; Roman Sloutsky; Veronika Vonstein; Ross Overbeek; Andrei L Osterman
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

Review 3.  Algal photosynthesis as the primary driver for a sustainable development in energy, feed, and food production.

Authors:  Ida G Anemaet; Martijn Bekker; Klaas J Hellingwerf
Journal:  Mar Biotechnol (NY)       Date:  2010-07-20       Impact factor: 3.619

4.  Identification of substrain-specific mutations by massively parallel whole-genome resequencing of Synechocystis sp. PCC 6803.

Authors:  Yu Kanesaki; Yuh Shiwa; Naoyuki Tajima; Marie Suzuki; Satoru Watanabe; Naoki Sato; Masahiko Ikeuchi; Hirofumi Yoshikawa
Journal:  DNA Res       Date:  2011-12-22       Impact factor: 4.458

5.  Selection of suitable reference genes for RT-qPCR analyses in cyanobacteria.

Authors:  Filipe Pinto; Catarina C Pacheco; Daniela Ferreira; Pedro Moradas-Ferreira; Paula Tamagnini
Journal:  PLoS One       Date:  2012-04-04       Impact factor: 3.240

6.  The bag or the spindle: the cell factory at the time of systems' biology.

Authors:  Antoine Danchin
Journal:  Microb Cell Fact       Date:  2004-11-10       Impact factor: 5.328

7.  Proteomics with a pinch of salt: a cyanobacterial perspective.

Authors:  Jagroop Pandhal; Phillip C Wright; Catherine A Biggs
Journal:  Saline Systems       Date:  2008-04-15

8.  Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites.

Authors:  Farai Maphosa; Shakti H Lieten; Inez Dinkla; Alfons J Stams; Hauke Smidt; Donna E Fennell
Journal:  Front Microbiol       Date:  2012-10-02       Impact factor: 5.640

9.  The quantitative proteomic response of Synechocystis sp. PCC6803 to phosphate acclimation.

Authors:  Matthew A Fuszard; Saw Yen Ow; Chee Sian Gan; Josseilin Noirel; Nigel G Ternan; Geoff McMullan; Catherine A Biggs; Kenneth F Reardon; Phillip C Wright
Journal:  Aquat Biosyst       Date:  2013-02-26

10.  SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Woo-Yeon Kim; Sungsoo Kang; Byoung-Chul Kim; Jeehyun Oh; Seongwoong Cho; Jong Bhak; Jong-Soon Choi
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

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