Literature DB >> 14565773

3D-MEDNEs: an alternative "in silico" technique for chemical research in toxicology. 1. prediction of chemically induced agranulocytosis.

Humberto González Díaz1, Yovani Marrero, Ivan Hernández, Iyusmila Bastida, Esvieta Tenorio, Oslay Nasco, Eugenio Uriarte, Nilo Castañedo, Miguel A Cabrera, Edisleidy Aguila, Osmani Marrero, Armando Morales, Maikel Pérez.   

Abstract

A novel approach to molecular negentropy from the point of view of Markov models is introduced. Stochastic negentropies (MEDNEs) are used to develop a linear discriminant analysis. The discriminant analysis produced a set of two discriminant functions, which gave rise to a very good separation of 93.38% of 151 chemicals (training series) into two groups. The total predictability (86.67%, i.e., 52 compounds out of 60) was tested by means of an external validation set. Randić's orthogonalization procedures allowed interpretation of the model while avoiding collinearity descriptors. On the other hand, factor analysis was used to suggest the relation of MEDNEs with other molecular descriptors and properties into a property space. Three principal factors (related to three orthogonal MEDNEs) can be used to explain approximately 90% of the variance of different molecular parameters of halobenzenes including bulk, energetic, dipolar, molecular surface-related, and hydrophobic parameters. Finally, preliminary experimental results coincide with a theoretical prediction when agranulocytosis induction by G-1, a novel microcidal that presents Z/E isomerism, is not detected.

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Year:  2003        PMID: 14565773     DOI: 10.1021/tx0256432

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  7 in total

1.  Non-stochastic and stochastic linear indices of the molecular pseudograph's atom-adjacency matrix: a novel approach for computational in silico screening and "rational" selection of new lead antibacterial agents.

Authors:  Yovani Marrero-Ponce; Ricardo Medina Marrero; Francisco Torrens; Yamile Martinez; Milagros García Bernal; Vicente Romero Zaldivar; Eduardo A Castro; Ricardo Grau Abalo
Journal:  J Mol Model       Date:  2005-11-04       Impact factor: 1.810

2.  TOMOCOMD-CARDD, a novel approach for computer-aided 'rational' drug design: I. Theoretical and experimental assessment of a promising method for computational screening and in silico design of new anthelmintic compounds.

Authors:  Yovani Marrero-Ponce; Juan A Castillo-Garit; Ervelio Olazabal; Hector S Serrano; Alcidez Morales; Nilo Castañedo; Froylán Ibarra-Velarde; Alma Huesca-Guillen; Elisa Jorge; Arletys del Valle; Francisco Torrens; Eduardo A Castro
Journal:  J Comput Aided Mol Des       Date:  2004-10       Impact factor: 3.686

3.  A radial-distribution-function approach for predicting rodent carcinogenicity.

Authors:  Aliuska Helguera Morales; Miguel Angel Cabrera Pérez; Maykel Pérez González
Journal:  J Mol Model       Date:  2006-01-19       Impact factor: 1.810

4.  Bond-based 2D TOMOCOMD-CARDD approach for drug discovery: aiding decision-making in 'in silico' selection of new lead tyrosinase inhibitors.

Authors:  Yovani Marrero-Ponce; Mahmud Tareq Hassan Khan; Gerardo M Casañola-Martín; Arjumand Ather; Mukhlis N Sultankhodzhaev; Ramón García-Domenech; Francisco Torrens; Richard Rotondo
Journal:  J Comput Aided Mol Des       Date:  2007-02-28       Impact factor: 3.686

Review 5.  Protein quadratic indices of the "macromolecular pseudograph's alpha-carbon atom adjacency matrix". 1. Prediction of Arc repressor alanine-mutant's stability.

Authors:  Yovani Marrero Ponce; Ricardo Medina Marrero; Eduardo A Castro; Ronal Ramos de Armas; Humberto González Díaz; Vicente Romero Zaldivar; Francisco Torrens
Journal:  Molecules       Date:  2004-12-31       Impact factor: 4.411

6.  Markovian chemicals "in silico" design (MARCH-INSIDE), a promising approach for computer-aided molecular design III: 2.5D indices for the discovery of antibacterials.

Authors:  Humberto González-Díaz; Luis A Torres-Gómez; Yaima Guevara; Manuel S Almeida; Reinaldo Molina; Nilo Castañedo; Lourdes Santana; Eugenio Uriarte
Journal:  J Mol Model       Date:  2005-02-19       Impact factor: 1.810

7.  Application of linear discriminant analysis in the virtual screening of antichagasic drugs through trypanothione reductase inhibition.

Authors:  Julián J Prieto; Alan Talevi; Luis E Bruno-Blanch
Journal:  Mol Divers       Date:  2006-09-21       Impact factor: 2.943

  7 in total

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