Literature DB >> 14561323

Scaling properties and symmetrical patterns in the epidemiology of rotavirus infection.

Marco V José1, Ruth F Bishop.   

Abstract

The rich epidemiological database of the incidence of rotavirus, as a cause of severe diarrhoea in young children, coupled with knowledge of the natural history of the infection, can make this virus a paradigm for studies of epidemic dynamics. The cyclic recurrence of childhood rotavirus epidemics in unvaccinated populations provides one of the best documented phenomena in population dynamics. This paper makes use of epidemiological data on rotavirus infection in young children admitted to hospital in Melbourne, Australia from 1977 to 2000. Several mathematical methods were used to characterize the overall dynamics of rotavirus infections as a whole and individually as serotypes G1, G2, G3, G4 and G9. These mathematical methods are as follows: seasonal autoregressive integrated moving-average (SARIMA) models, power spectral density (PSD), higher-order spectral analysis (HOSA) (bispectrum estimation and quadratic phase coupling (QPC)), detrended fluctuation analysis (DFA), wavelet analysis (WA) and a surrogate data analysis technique. Each of these techniques revealed different dynamic aspects of rotavirus epidemiology. In particular, we confirm the existence of an annual, biannual and a quinquennial period but additionally we found other embedded cycles (e.g. ca. 3 years). There seems to be an overall unique geometric and dynamic structure of the data despite the apparent changes in the dynamics of the last years. The inherent dynamics seems to be conserved regardless of the emergence of new serotypes, the re-emergence of old serotypes or the transient disappearance of a particular serotype. More importantly, the dynamics of all serotypes is multiple synchronized so that they behave as a single entity at the epidemic level. Overall, the whole dynamics follow a scale-free power-law fractal scaling behaviour. We found that there are three different scaling regions in the time-series, suggesting that processes influencing the epidemic dynamics of rotavirus over less than 12 months differ from those that operate between 1 and ca. 3 years, as well as those between 3 and ca. 5 years. To discard the possibility that the observed patterns could be due to artefacts, we applied a surrogate data analysis technique which enabled us to discern if only random components or linear features of the incidence of rotavirus contribute to its dynamics. The global dynamics of the epidemic is portrayed by wavelet-based incidence analysis. The resulting wavelet transform of the incidence of rotavirus crisply reveals a repeating pattern over time that looks similar on many scales (a property called self-similarity). Both the self-similar behaviour and the absence of a single characteristic scale of the power-law fractal-like scaling of the incidence of rotavirus infection imply that there is not a universal inherently more virulent serotype to which severe gastroenteritis can uniquely be ascribed.

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Year:  2003        PMID: 14561323      PMCID: PMC1693266          DOI: 10.1098/rstb.2003.1291

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  28 in total

1.  Epidemic dynamics and endemic states in complex networks.

Authors:  R Pastor-Satorras; A Vespignani
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-05-22

2.  Report of the Australian Rotavirus Surveillance Program, 2000/2001.

Authors:  P Masendycz; N Bogdanovic-Sakran; C Kirkwood; R Bishop; G Barnes
Journal:  Commun Dis Intell Q Rep       Date:  2001-08

3.  Epidemiology of rotavirus serotypes in Melbourne, Australia, from 1973 to 1989.

Authors:  R F Bishop; L E Unicomb; G L Barnes
Journal:  J Clin Microbiol       Date:  1991-05       Impact factor: 5.948

4.  Annual rotavirus epidemic patterns in North America. Results of a 5-year retrospective survey of 88 centers in Canada, Mexico, and the United States. Rotavirus Study Group.

Authors:  C W LeBaron; J Lew; R I Glass; J M Weber; G M Ruiz-Palacios
Journal:  JAMA       Date:  1990 Aug 22-29       Impact factor: 56.272

5.  Power laws governing epidemics in isolated populations.

Authors:  C J Rhodes; R M Anderson
Journal:  Nature       Date:  1996-06-13       Impact factor: 49.962

Review 6.  Rotavirus gene structure and function.

Authors:  M K Estes; J Cohen
Journal:  Microbiol Rev       Date:  1989-12

7.  Fractal time and 1/f noise in complex systems.

Authors:  M F Schlesinger
Journal:  Ann N Y Acad Sci       Date:  1987       Impact factor: 5.691

8.  Epidemiological model of diarrhoeal diseases and its application in prevention and control.

Authors:  M V José; J R Bobadilla
Journal:  Vaccine       Date:  1994-02       Impact factor: 3.641

9.  Rotavirus gastroenteritis in Italian children: can severity of symptoms be related to the infecting virus?

Authors:  A Cascio; E Vizzi; C Alaimo; S Arista
Journal:  Clin Infect Dis       Date:  2001-03-23       Impact factor: 9.079

10.  Rotavirus diarrhea in Bangladeshi children: correlation of disease severity with serotypes.

Authors:  C Bern; L Unicomb; J R Gentsch; N Banul; M Yunus; R B Sack; R I Glass
Journal:  J Clin Microbiol       Date:  1992-12       Impact factor: 5.948

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5.  Spectral analysis based on fast Fourier transformation (FFT) of surveillance data: the case of scarlet fever in China.

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6.  Time-series analysis of hepatitis A, B, C and E infections in a large Chinese city: application to prediction analysis.

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