Literature DB >> 14551426

Genomics. Microarrays--guilt by association.

John Quackenbush1.   

Abstract

DNA microarray analysis has provided a wealth of data on global patterns of gene expression but has yet to deliver on its early promise of identifying networks of interacting gene products. In his Perspective, Quackenbush discusses new work (Stuart et al.) that uses evolutionary conservation of gene expression patterns in yeast, worm, fruit fly, and human in an attempt to identify functionally related groups of genes.

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Year:  2003        PMID: 14551426     DOI: 10.1126/science.1090887

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  60 in total

Review 1.  Assessment of kidney organ quality and prediction of outcome at time of transplantation.

Authors:  Thomas F Mueller; Kim Solez; Valeria Mas
Journal:  Semin Immunopathol       Date:  2011-01-28       Impact factor: 9.623

2.  Functionalization of a protosynaptic gene expression network.

Authors:  Cecilia Conaco; Danielle S Bassett; Hongjun Zhou; Mary Luz Arcila; Sandie M Degnan; Bernard M Degnan; Kenneth S Kosik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-20       Impact factor: 11.205

3.  A semantic analysis of the annotations of the human genome.

Authors:  Purvesh Khatri; Bogdan Done; Archana Rao; Arina Done; Sorin Draghici
Journal:  Bioinformatics       Date:  2005-06-14       Impact factor: 6.937

Review 4.  The Schistosoma mansoni transcriptome: an update.

Authors:  Guilherme Oliveira
Journal:  Exp Parasitol       Date:  2007-06-12       Impact factor: 2.011

5.  Network modelling of gene regulation.

Authors:  Joshua W K Ho; Michael A Charleston
Journal:  Biophys Rev       Date:  2010-12-23

6.  Comparison of threshold selection methods for microarray gene co-expression matrices.

Authors:  Bhavesh R Borate; Elissa J Chesler; Michael A Langston; Arnold M Saxton; Brynn H Voy
Journal:  BMC Res Notes       Date:  2009-12-02

7.  Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection.

Authors:  Ming Hu; Zhaohui S Qin
Journal:  PLoS One       Date:  2009-02-13       Impact factor: 3.240

8.  Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells.

Authors:  Jun Cai; Dan Xie; Zhewen Fan; Hiram Chipperfield; John Marden; Wing H Wong; Sheng Zhong
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

9.  Microevolution of group A streptococci in vivo: capturing regulatory networks engaged in sociomicrobiology, niche adaptation, and hypervirulence.

Authors:  Ramy K Aziz; Rita Kansal; Bruce J Aronow; William L Taylor; Sarah L Rowe; Michael Kubal; Gursharan S Chhatwal; Mark J Walker; Malak Kotb
Journal:  PLoS One       Date:  2010-04-14       Impact factor: 3.240

10.  Patterns of stochastic behavior in dynamically unstable high-dimensional biochemical networks.

Authors:  Simon Rosenfeld
Journal:  Gene Regul Syst Bio       Date:  2009-01-29
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