Literature DB >> 1454792

Evidence that the packaging signal for nodaviral RNA2 is a bulged stem-loop.

W Zhong1, R Dasgupta, R Rueckert.   

Abstract

Flock house virus is an insect virus belonging to the family Nodaviridae; members of this family are characterized by a small bipartite positive-stranded RNA genome. The larger genomic segment, RNA1, encodes viral replication proteins, whereas the smaller one, RNA2, encodes coat protein. Both RNAs are packaged in a single particle. A defective-interfering RNA (DI-634), isolated from a line of Drosophila cells persistently infected with Flock house virus, was used to show that a 32-base region of RNA2 (bases 186-217) is required for packaging into virions. RNA folding analysis predicted that this region forms a stem-loop structure with a 5-base loop and a 13-base-pair bulged stem.

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Year:  1992        PMID： 1454792      PMCID： PMC50506          DOI： 10.1073/pnas.89.23.11146

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  36 in total

1.  Lipofection: a highly efficient, lipid-mediated DNA-transfection procedure.

Authors:  P L Felgner; T R Gadek; M Holm; R Roman; H W Chan; M Wenz; J P Northrop; G M Ringold; M Danielsen
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

2.  Autonomous replication and expression of RNA 1 from black beetle virus.

Authors:  T M Gallagher; P D Friesen; R R Rueckert
Journal:  J Virol       Date:  1983-05       Impact factor: 5.103

3.  Infectious RNA derived by transcription from cloned cDNA copies of the genomic RNA of an insect virus.

Authors:  B Dasmahapatra; R Dasgupta; K Saunders; B Selling; T Gallagher; P Kaesberg
Journal:  Proc Natl Acad Sci U S A       Date:  1986-01       Impact factor: 11.205

4.  Nucleotide sequences of three Nodavirus RNA2's: the messengers for their coat protein precursors.

Authors:  R Dasgupta; J Y Sgro
Journal:  Nucleic Acids Res       Date:  1989-09-25       Impact factor: 16.971

5.  RNA binding site of R17 coat protein.

Authors:  P J Romaniuk; P Lowary; H N Wu; G Stormo; O C Uhlenbeck
Journal:  Biochemistry       Date:  1987-03-24       Impact factor: 3.162

6.  Assembly-dependent maturation cleavage in provirions of a small icosahedral insect ribovirus.

Authors:  T M Gallagher; R R Rueckert
Journal:  J Virol       Date:  1988-09       Impact factor: 5.103

7.  Role of a bulged A residue in a specific RNA-protein interaction.

Authors:  H N Wu; O C Uhlenbeck
Journal:  Biochemistry       Date:  1987-12-15       Impact factor: 3.162

8.  Template-dependent RNA polymerase from black beetle virus-infected Drosophila melanogaster cells.

Authors:  K Saunders; P Kaesberg
Journal:  Virology       Date:  1985-12       Impact factor: 3.616

9.  The tobacco mosaic virus assembly origin RNA. Functional characteristics defined by directed mutagenesis.

Authors:  D R Turner; L E Joyce; P J Butler
Journal:  J Mol Biol       Date:  1988-10-05       Impact factor: 5.469

10.  Structure of the black beetle virus genome and its functional implications.

Authors:  B Dasmahapatra; R Dasgupta; A Ghosh; P Kaesberg
Journal:  J Mol Biol       Date:  1985-03-20       Impact factor: 5.469
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  35 in total

1.  In silico reconstruction of viral genomes from small RNAs improves virus-derived small interfering RNA profiling.

Authors:  Nicolas Vodovar; Bertsy Goic; Hervé Blanc; Maria-Carla Saleh
Journal:  J Virol       Date:  2011-08-31       Impact factor: 5.103

2.  Murine coronavirus packaging signal confers packaging to nonviral RNA.

Authors:  K Woo; M Joo; K Narayanan; K H Kim; S Makino
Journal:  J Virol       Date:  1997-01       Impact factor: 5.103

3.  RNA-mediated interference and reverse transcription control the persistence of RNA viruses in the insect model Drosophila.

Authors:  Bertsy Goic; Nicolas Vodovar; Juan A Mondotte; Clément Monot; Lionel Frangeul; Hervé Blanc; Valérie Gausson; Jorge Vera-Otarola; Gael Cristofari; Maria-Carla Saleh
Journal:  Nat Immunol       Date:  2013-02-24       Impact factor: 25.606

4.  In vivo self-interaction of nodavirus RNA replicase protein a revealed by fluorescence resonance energy transfer.

Authors:  Billy T Dye; David J Miller; Paul Ahlquist
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

5.  Reconstitution of Flock House provirions: a model system for studying structure and assembly.

Authors:  A Schneemann; T M Gallagher; R R Rueckert
Journal:  J Virol       Date:  1994-07       Impact factor: 5.103

6.  Assembly of two independent populations of flock house virus particles with distinct RNA packaging characteristics in the same cell.

Authors:  P Arno Venter; Anette Schneemann
Journal:  J Virol       Date:  2006-11-01       Impact factor: 5.103

7.  cis-acting requirements for the replication of flock house virus RNA 2.

Authors:  L A Ball; Y Li
Journal:  J Virol       Date:  1993-06       Impact factor: 5.103

8.  A novel coding-region RNA element modulates infectious dengue virus particle production in both mammalian and mosquito cells and regulates viral replication in Aedes aegypti mosquitoes.

Authors:  Anna Maria Groat-Carmona; Susana Orozco; Peter Friebe; Anne Payne; Laura Kramer; Eva Harris
Journal:  Virology       Date:  2012-07-25       Impact factor: 3.616

9.  Heterologous RNA encapsidated in Pariacoto virus-like particles forms a dodecahedral cage similar to genomic RNA in wild-type virions.

Authors:  Karyn N Johnson; Liang Tang; John E Johnson; L Andrew Ball
Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

Review 10.  Cis-acting RNA elements in human and animal plus-strand RNA viruses.

Authors:  Ying Liu; Eckard Wimmer; Aniko V Paul
Journal:  Biochim Biophys Acta       Date:  2009-09-23
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