Literature DB >> 14534178

Discovery of significant rules for classifying cancer diagnosis data.

Jinyan Li1, Huiqing Liu, See-Kiong Ng, Limsoon Wong.   

Abstract

METHODS AND
RESULTS: We introduce a new method to discover many diversified and significant rules from high dimensional profiling data. We also propose to aggregate the discriminating power of these rules for reliable predictions. The discovered rules are found to contain low-ranked features; these features are found to be sometimes necessary for classifiers to achieve perfect accuracy. The use of low-ranked but essential features in our method is in contrast to the prevailing use of an ad-hoc number of only top-ranked features. On a wide range of data sets, our method displayed highly competitive accuracy compared to the best performance of other kinds of classification models. In addition to accuracy, our method also provides comprehensible rules to help elucidate the translation between raw data and useful knowledge.

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Year:  2003        PMID: 14534178     DOI: 10.1093/bioinformatics/btg1066

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  13 in total

1.  A DEEP LEARNING APPROACH FOR CANCER DETECTION AND RELEVANT GENE IDENTIFICATION.

Authors:  Padideh Danaee; Reza Ghaeini; David A Hendrix
Journal:  Pac Symp Biocomput       Date:  2017

2.  Mining SARS-CoV protease cleavage data using non-orthogonal decision trees: a novel method for decisive template selection.

Authors:  Zheng Rong Yang
Journal:  Bioinformatics       Date:  2005-03-29       Impact factor: 6.937

3.  An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.

Authors:  Jianhua Ruan; Youping Deng; Edward J Perkins; Weixiong Zhang
Journal:  BMC Genomics       Date:  2009-07-07       Impact factor: 3.969

4.  The simple classification of multiple cancer types using a small number of significant genes.

Authors:  Tae Young Yang
Journal:  Mol Diagn Ther       Date:  2007       Impact factor: 4.074

5.  Individualized markers optimize class prediction of microarray data.

Authors:  Pavlos Pavlidis; Panayiota Poirazi
Journal:  BMC Bioinformatics       Date:  2006-07-14       Impact factor: 3.169

6.  The Use of Chemical-Chemical Interaction and Chemical Structure to Identify New Candidate Chemicals Related to Lung Cancer.

Authors:  Lei Chen; Jing Yang; Mingyue Zheng; Xiangyin Kong; Tao Huang; Yu-Dong Cai
Journal:  PLoS One       Date:  2015-06-05       Impact factor: 3.240

7.  Using contrast patterns between true complexes and random subgraphs in PPI networks to predict unknown protein complexes.

Authors:  Quanzhong Liu; Jiangning Song; Jinyan Li
Journal:  Sci Rep       Date:  2016-02-12       Impact factor: 4.379

8.  A combinational feature selection and ensemble neural network method for classification of gene expression data.

Authors:  Bing Liu; Qinghua Cui; Tianzi Jiang; Songde Ma
Journal:  BMC Bioinformatics       Date:  2004-09-27       Impact factor: 3.169

9.  Tumor classification ranking from microarray data.

Authors:  Rattikorn Hewett; Phongphun Kijsanayothin
Journal:  BMC Genomics       Date:  2008-09-16       Impact factor: 3.969

10.  Fuzzy support vector machine: an efficient rule-based classification technique for microarrays.

Authors:  Mohsen Hajiloo; Hamid R Rabiee; Mahdi Anooshahpour
Journal:  BMC Bioinformatics       Date:  2013-10-01       Impact factor: 3.169

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