Literature DB >> 14530390

The energetic cost of domain reorientation in maltose-binding protein as studied by NMR and fluorescence spectroscopy.

Oscar Millet1, Rhea P Hudson, Lewis E Kay.   

Abstract

Maltose-binding protein (MBP) is a two-domain protein that undergoes a ligand-mediated conformational rearrangement from an "open" to a "closed" structure on binding to maltooligosaccharides. To characterize the energy landscape associated with this transition, we have generated five variants of MBP with mutations located in the hinge region of the molecule. Residual dipolar couplings, measured in the presence of a weak alignment medium, have been used to establish that the average structures of the mutant proteins are related to each other by domain rotation about an invariant axis, with the rotation angle varying from 5 degrees to 28 degrees. Additionally, the domain orientations observed in the wild-type apo and ligand-bound (maltose, maltotriose, etc.) structures are related through a rotation of 35 degrees about the same axis. Remarkably, the free energy of unfolding, measured by equilibrium denaturation experiments and monitored by fluorescence spectroscopy, shows a linear correlation with the rotation angle, with the stability of the (apo)protein decreasing with domain closure by 212 +/- 16 cal mol-1 per degree of rotation. The apparent binding energy for maltose also shows a similar correlation with the interdomain angle, suggesting that the mutations, as they relate to binding, affect predominantly the ligand-free structure. The linearity of the energy change is interpreted in terms of an increase in the extent of hydrophobic surface that becomes solvent accessible on closure. The combination of structural, stability, and binding data allows separation of the energetics of domain reorientation from ligand binding. This work presents a near quantitative structure-energy-binding relationship for a series of mutants of MBP, illustrating the power of combined studies involving protein engineering and solution NMR spectroscopy.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 14530390      PMCID: PMC240681          DOI: 10.1073/pnas.2134311100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Crystallographic evidence of a large ligand-induced hinge-twist motion between the two domains of the maltodextrin binding protein involved in active transport and chemotaxis.

Authors:  A J Sharff; L E Rodseth; J C Spurlino; F A Quiocho
Journal:  Biochemistry       Date:  1992-11-10       Impact factor: 3.162

Review 2.  Chemotaxis receptors: a progress report on structure and function.

Authors:  S L Mowbray; M O Sandgren
Journal:  J Struct Biol       Date:  1998-12-15       Impact factor: 2.867

3.  Domain orientation in beta-cyclodextrin-loaded maltose binding protein: diffusion anisotropy measurements confirm the results of a dipolar coupling study.

Authors:  P M Hwang; N R Skrynnikov; L E Kay
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

Review 4.  Atomic structure and specificity of bacterial periplasmic receptors for active transport and chemotaxis: variation of common themes.

Authors:  F A Quiocho; P S Ledvina
Journal:  Mol Microbiol       Date:  1996-04       Impact factor: 3.501

5.  Solution structure of a calmodulin-target peptide complex by multidimensional NMR.

Authors:  M Ikura; G M Clore; A M Gronenborn; G Zhu; C B Klee; A Bax
Journal:  Science       Date:  1992-05-01       Impact factor: 47.728

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Three-dimensional structures of the periplasmic lysine/arginine/ornithine-binding protein with and without a ligand.

Authors:  B H Oh; J Pandit; C H Kang; K Nikaido; S Gokcen; G F Ames; S H Kim
Journal:  J Biol Chem       Date:  1993-05-25       Impact factor: 5.157

8.  Thermodynamic characterization of the reversible, two-state unfolding of maltose binding protein, a large two-domain protein.

Authors:  C Ganesh; A N Shah; C P Swaminathan; A Surolia; R Varadarajan
Journal:  Biochemistry       Date:  1997-04-22       Impact factor: 3.162

9.  Flexibility of the DNA-binding domains of trp repressor.

Authors:  C L Lawson; R G Zhang; R W Schevitz; Z Otwinowski; A Joachimiak; P B Sigler
Journal:  Proteins       Date:  1988

10.  The 1.9 A x-ray structure of a closed unliganded form of the periplasmic glucose/galactose receptor from Salmonella typhimurium.

Authors:  M M Flocco; S L Mowbray
Journal:  J Biol Chem       Date:  1994-03-25       Impact factor: 5.157

View more
  41 in total

1.  The energetics of structural change in maltose-binding protein.

Authors:  David E Wemmer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

2.  The 70-kDa heat shock protein chaperone nucleotide-binding domain in solution unveiled as a molecular machine that can reorient its functional subdomains.

Authors:  Yongbo Zhang; Erik R P Zuiderweg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-01       Impact factor: 11.205

3.  Evidence for an allosteric mechanism of substrate release from membrane-transporter accessory binding proteins.

Authors:  Fabrizio Marinelli; Sonja I Kuhlmann; Ernst Grell; Hans-Jörg Kunte; Christine Ziegler; José D Faraldo-Gómez
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

4.  Structure-based model of allostery predicts coupling between distant sites.

Authors:  Patrick Weinkam; Jaume Pons; Andrej Sali
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-08       Impact factor: 11.205

5.  Local encoding of computationally designed enzyme activity.

Authors:  Malin Allert; Mary A Dwyer; Homme W Hellinga
Journal:  J Mol Biol       Date:  2006-12-05       Impact factor: 5.469

6.  Crystallization, data collection and data processing of maltose-binding protein (MalE) from the phytopathogen Xanthomonas axonopodis pv. citri.

Authors:  C S Souza; L C S Ferreira; L Thomas; J A R G Barbosa; A Balan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-07

7.  Computational design of ligand binding is not a solved problem.

Authors:  Bettina Schreier; Christian Stumpp; Silke Wiesner; Birte Höcker
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-15       Impact factor: 11.205

Review 8.  Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation.

Authors:  G Marius Clore
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

9.  A single-molecule dissection of ligand binding to a protein with intrinsic dynamics.

Authors:  Eunkyung Kim; Sanghwa Lee; Aram Jeon; Jung Min Choi; Hee-Seung Lee; Sungchul Hohng; Hak-Sung Kim
Journal:  Nat Chem Biol       Date:  2013-03-17       Impact factor: 15.040

10.  Allosteric signaling and dynamics of the clamshell-like NMDA receptor GluN1 N-terminal domain.

Authors:  Shujia Zhu; David Stroebel; C Andrea Yao; Antoine Taly; Pierre Paoletti
Journal:  Nat Struct Mol Biol       Date:  2013-03-03       Impact factor: 15.369

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.