Literature DB >> 14523911

NMR spectroscopy of RNA.

Boris Fürtig1, Christian Richter, Jens Wöhnert, Harald Schwalbe.   

Abstract

NMR spectroscopy is a powerful tool for studying proteins and nucleic acids in solution. This is illustrated by the fact that nearly half of all current RNA structures were determined by using NMR techniques. Information about the structure, dynamics, and interactions with other RNA molecules, proteins, ions, and small ligands can be obtained for RNA molecules up to 100 nucleotides. This review provides insight into the resonance assignment methods that are the first and crucial step of all NMR studies, into the determination of base-pair geometry, into the examination of local and global RNA conformation, and into the detection of interaction sites of RNA. Examples of NMR investigations of RNA are given by using several different RNA molecules to illustrate the information content obtainable by NMR spectroscopy and the applicability of NMR techniques to a wide range of biologically interesting RNA molecules.

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Year:  2003        PMID: 14523911     DOI: 10.1002/cbic.200300700

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  158 in total

1.  Superior 5' homogeneity of RNA from ATP-initiated transcription under the T7 phi 2.5 promoter.

Authors:  Tricia M Coleman; Guocan Wang; Faqing Huang
Journal:  Nucleic Acids Res       Date:  2004-01-15       Impact factor: 16.971

2.  Measuring single-molecule nucleic acid dynamics in solution by two-color filtered ratiometric fluorescence correlation spectroscopy.

Authors:  Haitao Li; Xiaojun Ren; Liming Ying; Shankar Balasubramanian; David Klenerman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-27       Impact factor: 11.205

3.  Sugar-to-base correlation in nucleic acids with a 5D APSY-HCNCH or two 3D APSY-HCN experiments.

Authors:  Barbara Krähenbühl; Daniela Hofmann; Christophe Maris; Gerhard Wider
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

4.  Direct ¹³C-detected NMR experiments for mapping and characterization of hydrogen bonds in RNA.

Authors:  Boris Fürtig; Robbin Schnieders; Christian Richter; Heidi Zetzsche; Sara Keyhani; Christina Helmling; Helena Kovacs; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2016-02-06       Impact factor: 2.835

5.  An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs.

Authors:  Jonas Noeske; Christian Richter; Marc A Grundl; Hamid R Nasiri; Harald Schwalbe; Jens Wöhnert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-21       Impact factor: 11.205

6.  Structural study of the H/ACA snoRNP components Nop10p and the 3' hairpin of U65 snoRNA.

Authors:  May Khanna; Haihong Wu; Carina Johansson; Michèle Caizergues-Ferrer; Juli Feigon
Journal:  RNA       Date:  2006-01       Impact factor: 4.942

7.  Fragmentation of oligoribonucleotides from gas-phase ion-electron reactions.

Authors:  Jiong Yang; Kristina Håkansson
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

8.  Structural plasticity and Mg2+ binding properties of RNase P P4 from combined analysis of NMR residual dipolar couplings and motionally decoupled spin relaxation.

Authors:  Melissa M Getz; Andy J Andrews; Carol A Fierke; Hashim M Al-Hashimi
Journal:  RNA       Date:  2006-12-28       Impact factor: 4.942

Review 9.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

10.  Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings.

Authors:  Maximillian H Bailor; Catherine Musselman; Alexandar L Hansen; Kush Gulati; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

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