Literature DB >> 14522049

The process of structure-based drug design.

Amy C Anderson1.   

Abstract

The field of structure-based drug design is a rapidly growing area in which many successes have occurred in recent years. The explosion of genomic, proteomic, and structural information has provided hundreds of new targets and opportunities for future drug lead discovery. This review summarizes the process of structure-based drug design and includes, primarily, the choice of a target, the evaluation of a structure of that target, the pivotal questions to consider in choosing a method for drug lead discovery, and evaluation of the drug leads. Key principles in the field of structure-based drug design will be illustrated through a case study that explores drug design for AmpC beta-lactamase.

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Year:  2003        PMID: 14522049     DOI: 10.1016/j.chembiol.2003.09.002

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  116 in total

1.  KB-Rank: efficient protein structure and functional annotation identification via text query.

Authors:  Elchin S Julfayev; Ryan J McLaughlin; Yi-Ping Tao; William A McLaughlin
Journal:  J Struct Funct Genomics       Date:  2012-01-21

2.  Biochemical and structural characterization of an essential acyl coenzyme A carboxylase from Mycobacterium tuberculosis.

Authors:  Gabriela Gago; Daniel Kurth; Lautaro Diacovich; Shiou-Chuan Tsai; Hugo Gramajo
Journal:  J Bacteriol       Date:  2006-01       Impact factor: 3.490

Review 3.  Target assessment for antiparasitic drug discovery.

Authors:  Julie A Frearson; Paul G Wyatt; Ian H Gilbert; Alan H Fairlamb
Journal:  Trends Parasitol       Date:  2007-10-24

Review 4.  Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding.

Authors:  Vijay M Krishnamurthy; George K Kaufman; Adam R Urbach; Irina Gitlin; Katherine L Gudiksen; Douglas B Weibel; George M Whitesides
Journal:  Chem Rev       Date:  2008-03       Impact factor: 60.622

Review 5.  The multi-copy simultaneous search methodology: a fundamental tool for structure-based drug design.

Authors:  Christian R Schubert; Collin M Stultz
Journal:  J Comput Aided Mol Des       Date:  2009-06-09       Impact factor: 3.686

6.  Fragment-based in silico modeling of multi-target inhibitors against breast cancer-related proteins.

Authors:  Alejandro Speck-Planche; M Natália D S Cordeiro
Journal:  Mol Divers       Date:  2017-02-13       Impact factor: 2.943

7.  Docking to RNA via root-mean-square-deviation-driven energy minimization with flexible ligands and flexible targets.

Authors:  Christophe Guilbert; Thomas L James
Journal:  J Chem Inf Model       Date:  2008-05-30       Impact factor: 4.956

8.  Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement.

Authors:  Sumudu P Leelananda; Steffen Lindert
Journal:  J Chem Inf Model       Date:  2019-12-24       Impact factor: 4.956

9.  Exploring the binding pocket for pyridopyrimidine ligands at the CCK1 receptor by molecular docking.

Authors:  Amel Toumi-Maouche; Boubekeur Maouche; Safia Taïri-Kellou; Salima El-Aoufi; Mercedes Martín-Martínez; Rosario González-Muñiz; Daniel Fourmy; Bernard Maigret
Journal:  J Mol Model       Date:  2008-02-20       Impact factor: 1.810

10.  Structure-Based Design of Anticancer Prodrug PABA/NO.

Authors:  Xinhua Ji; Ajai Pal; Ravi Kalathur; Xun Hu; Yijun Gu; Joseph E Saavedra; Gregory S Buzard; Aloka Srinivasan; Larry K Keefer; Shivendra V Singh
Journal:  Drug Des Devel Ther       Date:  2008       Impact factor: 4.162

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