Literature DB >> 14519859

Does selection mold molecular networks?

Andreas Wagner1.   

Abstract

The dissection of molecular networks vital to cellular life can provide important hints about optimal network design principles. However, these hints can become conclusive only if one can determine that natural selection has molded a network's structure. I illustrate the importance of thorough studies of network evolution with two recent examples, one from genome-scale networks, the other from small transcriptional regulation circuits.

Mesh:

Year:  2003        PMID: 14519859     DOI: 10.1126/stke.2003.202.pe41

Source DB:  PubMed          Journal:  Sci STKE        ISSN: 1525-8882


  18 in total

Review 1.  Genomes, phylogeny, and evolutionary systems biology.

Authors:  Mónica Medina
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-25       Impact factor: 11.205

2.  Spontaneous emergence of modularity in cellular networks.

Authors:  Ricard V Solé; Sergi Valverde
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

3.  From evidence to inference: probing the evolution of protein interaction networks.

Authors:  Oliver Ratmann; Carsten Wiuf; John W Pinney
Journal:  HFSP J       Date:  2009-10-19

4.  Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topology.

Authors:  Troy Ruths; Luay Nakhleh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

5.  Ground state robustness as an evolutionary design principle in signaling networks.

Authors:  Onder Kartal; Oliver Ebenhöh
Journal:  PLoS One       Date:  2009-12-01       Impact factor: 3.240

Review 6.  Making sense of transcription networks.

Authors:  Trevor R Sorrells; Alexander D Johnson
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

7.  ncDNA and drift drive binding site accumulation.

Authors:  Troy Ruths; Luay Nakhleh
Journal:  BMC Evol Biol       Date:  2012-08-30       Impact factor: 3.260

8.  Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Authors:  Teresa Reguly; Ashton Breitkreutz; Lorrie Boucher; Bobby-Joe Breitkreutz; Nizar N Batada; Gary C Hon; Chad L Myers; Ainslie Parsons; Helena Friesen; Rose Oughtred; Amy Tong; Chris Stark; Yuen Ho; David Botstein; Brenda Andrews; Charles Boone; Olga G Troyanskya; Trey Ideker; Kara Dolinski; Mike Tyers
Journal:  J Biol       Date:  2006-06-08

9.  Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence.

Authors:  Wan Kyu Kim; Edward M Marcotte
Journal:  PLoS Comput Biol       Date:  2008-11-28       Impact factor: 4.475

10.  Compensatory evolution for a gene deletion is not limited to its immediate functional network.

Authors:  W R Harcombe; R Springman; J J Bull
Journal:  BMC Evol Biol       Date:  2009-05-16       Impact factor: 3.260

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