Literature DB >> 14518977

Divergent function in the crotonase superfamily: an anhydride intermediate in the reaction catalyzed by 3-hydroxyisobutyryl-CoA hydrolase.

Brian J Wong1, John A Gerlt.   

Abstract

3-Hydroxyisobutyryl-CoA hydrolase (HICH), a member of the enoyl-CoA (crotonase) superfamily, catalyzes the hydrolysis of 3-hydroxyisobutyryl-CoA to 3-hydroxyisobutyrate. Like other members of the superfamily, the sequence of HICH contains conserved sequences for an oxyanion hole that stabilizes anionic intermediates. In contrast to most members of the superfamily, the reaction catalyzed by HICH does not proceed via formation of a thioester enolate anion; instead, evidence based on substrate deuterium isotope effects, the reactivity of substrate analogues that cannot form thioester enolate anions, single-turnover experiments in H218O, and the kinetic phenotypes of site-directed mutants provide evidence for a mechanism involving the formation of an anhydride intermediate involving Glu143 in the active site. In the reactions catalyzed by many members of the superfamily, homologues of Glu143 abstract the alpha proton of the thioester substrate to generate the thioester enolate anion intermediate. Presumably, one or more of the anionic tetrahedral intermediates on the HICH reaction coordinate are stabilized by the oxyanion hole. Thus, we conclude that the conserved oxyanion hole in this superfamily can be used to stabilize a variety of anionic intermediates.

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Year:  2003        PMID: 14518977     DOI: 10.1021/ja037652i

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  The catalytic mechanism of the hotdog-fold enzyme superfamily 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU.

Authors:  Feng Song; James B Thoden; Zhihao Zhuang; John Latham; Michael Trujillo; Hazel M Holden; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2012-08-20       Impact factor: 3.162

2.  Catalytic control of enzymatic fluorine specificity.

Authors:  Amy M Weeks; Michelle C Y Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

3.  Investigation of the catalytic mechanism of the hotdog-fold enzyme superfamily Pseudomonas sp. strain CBS3 4-hydroxybenzoyl-CoA thioesterase.

Authors:  Zhihao Zhuang; John Latham; Feng Song; Wenhai Zhang; Michael Trujillo; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2012-01-13       Impact factor: 3.162

4.  The Burkholderia cenocepacia BDSF quorum sensing fatty acid is synthesized by a bifunctional crotonase homologue having both dehydratase and thioesterase activities.

Authors:  Hongkai Bi; Quin H Christensen; Youjun Feng; Haihong Wang; John E Cronan
Journal:  Mol Microbiol       Date:  2012-01-29       Impact factor: 3.501

5.  A genome-wide gene-gene interaction analysis identifies an epistatic gene pair for lung cancer susceptibility in Han Chinese.

Authors:  Minjie Chu; Ruyang Zhang; Yang Zhao; Chen Wu; Huan Guo; Baosen Zhou; Jiachun Lu; Yongyong Shi; Juncheng Dai; Guangfu Jin; Hongxia Ma; Jing Dong; Yongyue Wei; Cheng Wang; Jianhang Gong; Chongqi Sun; Meng Zhu; Yongyong Qiu; Tangchun Wu; Zhibin Hu; Dongxin Lin; Hongbing Shen; Feng Chen
Journal:  Carcinogenesis       Date:  2013-12-09       Impact factor: 4.944

6.  SylC catalyzes ureido-bond formation during biosynthesis of the proteasome inhibitor syringolin A.

Authors:  Heidi J Imker; Christopher T Walsh; William M Wuest
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

7.  Quantum mechanical/molecular mechanical and density functional theory studies of a prototypical zinc peptidase (carboxypeptidase A) suggest a general acid-general base mechanism.

Authors:  Dingguo Xu; Hua Guo
Journal:  J Am Chem Soc       Date:  2009-07-22       Impact factor: 15.419

8.  Shifting Native Chemical Ligation into Reverse through N→S Acyl Transfer.

Authors:  Derek Macmillan; Anna Adams; Bhavesh Premdjee
Journal:  Isr J Chem       Date:  2011-10-05       Impact factor: 3.333

9.  Evolution by leaps: gene duplication in bacteria.

Authors:  Margrethe H Serres; Alastair R W Kerr; Thomas J McCormack; Monica Riley
Journal:  Biol Direct       Date:  2009-11-23       Impact factor: 4.540

10.  Crystal structure of DmdD, a crotonase superfamily enzyme that catalyzes the hydration and hydrolysis of methylthioacryloyl-CoA.

Authors:  Dazhi Tan; Warren M Crabb; William B Whitman; Liang Tong
Journal:  PLoS One       Date:  2013-05-21       Impact factor: 3.240

  10 in total

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