Literature DB >> 14517228

Role of the gamma-phosphate of ATP in triggering protein folding by GroEL-GroES: function, structure and energetics.

Charu Chaudhry1, George W Farr, Matthew J Todd, Hays S Rye, Axel T Brunger, Paul D Adams, Arthur L Horwich, Paul B Sigler.   

Abstract

Productive cis folding by the chaperonin GroEL is triggered by the binding of ATP but not ADP, along with cochaperonin GroES, to the same ring as non-native polypeptide, ejecting polypeptide into an encapsulated hydrophilic chamber. We examined the specific contribution of the gamma-phosphate of ATP to this activation process using complexes of ADP and aluminium or beryllium fluoride. These ATP analogues supported productive cis folding of the substrate protein, rhodanese, even when added to already-formed, folding-inactive cis ADP ternary complexes, essentially introducing the gamma-phosphate of ATP in an independent step. Aluminium fluoride was observed to stabilize the association of GroES with GroEL, with a substantial release of free energy (-46 kcal/mol). To understand the basis of such activation and stabilization, a crystal structure of GroEL-GroES-ADP.AlF3 was determined at 2.8 A. A trigonal AlF3 metal complex was observed in the gamma-phosphate position of the nucleotide pocket of the cis ring. Surprisingly, when this structure was compared with that of the previously determined GroEL-GroES-ADP complex, no other differences were observed. We discuss the likely basis of the ability of gamma-phosphate binding to convert preformed GroEL-GroES-ADP-polypeptide complexes into the folding-active state.

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Year:  2003        PMID: 14517228      PMCID: PMC204461          DOI: 10.1093/emboj/cdg477

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  41 in total

1.  A cytoplasmic chaperonin that catalyzes beta-actin folding.

Authors:  Y Gao; J O Thomas; R L Chow; G H Lee; N J Cowan
Journal:  Cell       Date:  1992-06-12       Impact factor: 41.582

2.  Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL.

Authors:  O Yifrach; A Horovitz
Journal:  Biochemistry       Date:  1995-04-25       Impact factor: 3.162

3.  The origins and consequences of asymmetry in the chaperonin reaction cycle.

Authors:  S G Burston; N A Ranson; A R Clarke
Journal:  J Mol Biol       Date:  1995-05-26       Impact factor: 5.469

4.  GroEL-mediated protein folding proceeds by multiple rounds of binding and release of nonnative forms.

Authors:  J S Weissman; Y Kashi; W A Fenton; A L Horwich
Journal:  Cell       Date:  1994-08-26       Impact factor: 41.582

5.  Facilitated folding of actins and tubulins occurs via a nucleotide-dependent interaction between cytoplasmic chaperonin and distinctive folding intermediates.

Authors:  R Melki; N J Cowan
Journal:  Mol Cell Biol       Date:  1994-05       Impact factor: 4.272

6.  Myosin active-site trapping with vanadate ion.

Authors:  C C Goodno
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

7.  Binding and hydrolysis of nucleotides in the chaperonin catalytic cycle: implications for the mechanism of assisted protein folding.

Authors:  G S Jackson; R A Staniforth; D J Halsall; T Atkinson; J J Holbrook; A R Clarke; S G Burston
Journal:  Biochemistry       Date:  1993-03-16       Impact factor: 3.162

Review 8.  Dynamics of the chaperonin ATPase cycle: implications for facilitated protein folding.

Authors:  M J Todd; P V Viitanen; G H Lorimer
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

9.  Chaperonin-facilitated refolding of ribulosebisphosphate carboxylase and ATP hydrolysis by chaperonin 60 (groEL) are K+ dependent.

Authors:  P V Viitanen; T H Lubben; J Reed; P Goloubinoff; D P O'Keefe; G H Lorimer
Journal:  Biochemistry       Date:  1990-06-19       Impact factor: 3.162

10.  Fluoride complexes of aluminium or beryllium act on G-proteins as reversibly bound analogues of the gamma phosphate of GTP.

Authors:  J Bigay; P Deterre; C Pfister; M Chabre
Journal:  EMBO J       Date:  1987-10       Impact factor: 11.598

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  53 in total

1.  The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity.

Authors:  Olivier Cordin; N Kyle Tanner; Monique Doère; Patrick Linder; Josette Banroques
Journal:  EMBO J       Date:  2004-06-17       Impact factor: 11.598

2.  A mobile loop order-disorder transition modulates the speed of chaperonin cycling.

Authors:  Frank Shewmaker; Michael J Kerner; Manajit Hayer-Hartl; Gracjana Klein; Costa Georgopoulos; Samuel J Landry
Journal:  Protein Sci       Date:  2004-07-06       Impact factor: 6.725

3.  Substrate polypeptide presents a load on the apical domains of the chaperonin GroEL.

Authors:  Fumihiro Motojima; Charu Chaudhry; Wayne A Fenton; George W Farr; Arthur L Horwich
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-12       Impact factor: 11.205

4.  Biography of Arthur L. Horwich.

Authors:  Tinsley H Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-12       Impact factor: 11.205

5.  Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites.

Authors:  Michael J Trnka; A L Burlingame
Journal:  Mol Cell Proteomics       Date:  2010-09-02       Impact factor: 5.911

6.  Single-molecule spectroscopy of protein folding in a chaperonin cage.

Authors:  Hagen Hofmann; Frank Hillger; Shawn H Pfeil; Armin Hoffmann; Daniel Streich; Dominik Haenni; Daniel Nettels; Everett A Lipman; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

7.  Single-molecule study on the decay process of the football-shaped GroEL-GroES complex using zero-mode waveguides.

Authors:  Tomoya Sameshima; Ryo Iizuka; Taro Ueno; Junichi Wada; Mutsuko Aoki; Naonobu Shimamoto; Iwao Ohdomari; Takashi Tanii; Takashi Funatsu
Journal:  J Biol Chem       Date:  2010-05-28       Impact factor: 5.157

8.  Polypeptide in the chaperonin cage partly protrudes out and then folds inside or escapes outside.

Authors:  Fumihiro Motojima; Masasuke Yoshida
Journal:  EMBO J       Date:  2010-10-19       Impact factor: 11.598

9.  Energetic cost of building a virus.

Authors:  Gita Mahmoudabadi; Ron Milo; Rob Phillips
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-16       Impact factor: 11.205

10.  Comparative analysis of the protein folding activities of two chaperonin subunits of Thermococcus strain KS-1: the effects of beryllium fluoride.

Authors:  Takao Yoshida; Ryo Iizuka; Keisuke Itami; Takuo Yasunaga; Haruhiko Sakuraba; Toshihisa Ohshima; Masafumi Yohda; Tadashi Maruyama
Journal:  Extremophiles       Date:  2006-10-28       Impact factor: 2.395

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