Literature DB >> 14512365

Soap-HT-BLAST: high throughput BLAST based on Web services.

Jiren Wang1, Qing Mu.   

Abstract

SUMMARY: A high throughput Basic Local Alignment Search Tool (BLAST) system based on Web services is implemented. It provides an alternative BLAST service and allows users to perform multiple BLAST queries at one run in a distributed, parallel environment through the Internet. AVAILABILITY: It is available at http://mammoth.bii.a-star.edu.sg/webservices/htblast/index.html and at http://www.bii.a-star.edu.sg/jiren/download.html

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Year:  2003        PMID： 14512365     DOI： 10.1093/bioinformatics/btg244

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy.

Authors:  Franklin Pérez; Juan Ortiz; Mariuxi Zhinaula; Cesar Gonzabay; Jorge Calderón; Filip A M J Volckaert
Journal:  Mar Biotechnol (NY)       Date:  2005-07-14       Impact factor: 3.619

2.  myExperiment: a repository and social network for the sharing of bioinformatics workflows.

Authors:  Carole A Goble; Jiten Bhagat; Sergejs Aleksejevs; Don Cruickshank; Danius Michaelides; David Newman; Mark Borkum; Sean Bechhofer; Marco Roos; Peter Li; David De Roure
Journal:  Nucleic Acids Res       Date:  2010-05-25       Impact factor: 16.971

Review 3.  Genetics of neurodegenerative diseases: insights from high-throughput resequencing.

Authors:  Shoji Tsuji
Journal:  Hum Mol Genet       Date:  2010-04-22       Impact factor: 6.150

4.  XML schemas for common bioinformatic data types and their application in workflow systems.

Authors:  Philipp N Seibel; Jan Krüger; Sven Hartmeier; Knut Schwarzer; Kai Löwenthal; Henning Mersch; Thomas Dandekar; Robert Giegerich
Journal:  BMC Bioinformatics       Date:  2006-11-06       Impact factor: 3.169

5.  Tentacle: distributed quantification of genes in metagenomes.

Authors:  Fredrik Boulund; Anders Sjögren; Erik Kristiansson
Journal:  Gigascience       Date:  2015-09-07       Impact factor: 6.524

6.  Genomic and AntiSMASH Analyses of Marine-Sponge-Derived Strain Aspergillus niger L14 Unveiling Its Vast Potential of Secondary Metabolites Biosynthesis.

Authors:  Ping Wang; Shuang Xu; Yuqi Tang; Hong Wang; Xuelian Bai; Huawei Zhang
Journal:  J Fungi (Basel)       Date:  2022-05-31

7.  A web services choreography scenario for interoperating bioinformatics applications.

Authors:  Remko de Knikker; Youjun Guo; Jin-Long Li; Albert K H Kwan; Kevin Y Yip; David W Cheung; Kei-Hoi Cheung
Journal:  BMC Bioinformatics       Date:  2004-03-10       Impact factor: 3.169
  7 in total

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