Literature DB >> 14512363

MutDB: annotating human variation with functionally relevant data.

Sean D Mooney1, Russ B Altman.   

Abstract

SUMMARY: We have developed a resource, MutDB (http://mutdb.org/), to aid in determining which single nucleotide polymorphisms (SNPs) are likely to alter the function of their associated protein product. MutDB contains protein structure annotations and comparative genomic annotations for 8000 disease-associated mutations and SNPs found in the UCSC Annotated Genome and the human RefSeq gene set. MutDB provides interactive mutation maps at the gene and protein levels, and allows for ranking of their predicted functional consequences based on conservation in multiple sequence alignments. AVAILABILITY: http://mutdb.org/ SUPPLEMENTARY INFORMATION: http://mutdb.org/about/about.html

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Year:  2003        PMID: 14512363     DOI: 10.1093/bioinformatics/btg241

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  19 in total

1.  Meet me halfway: when genomics meets structural bioinformatics.

Authors:  Sungsam Gong; Catherine L Worth; Tammy M K Cheng; Tom L Blundell
Journal:  J Cardiovasc Transl Res       Date:  2011-02-25       Impact factor: 4.132

2.  DES-Mutation: System for Exploring Links of Mutations and Diseases.

Authors:  Vasiliki Kordopati; Adil Salhi; Rozaimi Razali; Aleksandar Radovanovic; Faroug Tifratene; Mahmut Uludag; Yu Li; Ameerah Bokhari; Ahdab AlSaieedi; Arwa Bin Raies; Christophe Van Neste; Magbubah Essack; Vladimir B Bajic
Journal:  Sci Rep       Date:  2018-09-06       Impact factor: 4.379

3.  AMASS: a database for investigating protein structures.

Authors:  Clinton J Mielke; Lawrence J Mandarino; Valentin Dinu
Journal:  Bioinformatics       Date:  2014-02-03       Impact factor: 6.937

4.  Testing rare variants for association with diseases: a Bayesian marker selection approach.

Authors:  Lei Zhang; Yu-Fang Pei; Rong Hai; Yong Lin; Hong-Wen Deng
Journal:  Ann Hum Genet       Date:  2011-10-31       Impact factor: 1.670

Review 5.  Towards precision medicine: advances in computational approaches for the analysis of human variants.

Authors:  Thomas A Peterson; Emily Doughty; Maricel G Kann
Journal:  J Mol Biol       Date:  2013-08-17       Impact factor: 5.469

6.  PEPPI: a peptidomic database of human protein isoforms for proteomics experiments.

Authors:  Ao Zhou; Fan Zhang; Jake Y Chen
Journal:  BMC Bioinformatics       Date:  2010-10-07       Impact factor: 3.169

7.  Improved detection of rare genetic variants for diseases.

Authors:  Lei Zhang; Yu-Fang Pei; Jian Li; Christopher J Papasian; Hong-Wen Deng
Journal:  PLoS One       Date:  2010-11-08       Impact factor: 3.240

8.  SNPdbe: constructing an nsSNP functional impacts database.

Authors:  Christian Schaefer; Alice Meier; Burkhard Rost; Yana Bromberg
Journal:  Bioinformatics       Date:  2011-12-30       Impact factor: 6.937

9.  coliSNP database server mapping nsSNPs on protein structures.

Authors:  Hidetoshi Kono; Tomo Yuasa; Shinya Nishiue; Kei Yura
Journal:  Nucleic Acids Res       Date:  2007-10-05       Impact factor: 16.971

10.  SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry.

Authors:  Hong Xi; Jongsun Park; Guohui Ding; Yong-Hwan Lee; Yixue Li
Journal:  Nucleic Acids Res       Date:  2008-11-26       Impact factor: 16.971

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