Literature DB >> 14504841

How do proteins avoid becoming too stable? Biophysical studies into metastable proteins.

Lisa D Cabrita1, Stephen P Bottomley.   

Abstract

The vast majority of theoretical and experimental folding studies have shown that as a protein folds, it attempts to adopt a conformation that occurs at its lowest free energy minimum. However, studies on a small number of proteins have now shown that this is a generality. In this review we discuss recent data on how two proteins, alpha-lytic protease and alpha1-antitrypsin, successfully fold to their metastable native states, whilst avoiding more stable but inactive conformations.

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Year:  2003        PMID: 14504841     DOI: 10.1007/s00249-003-0356-1

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  63 in total

Review 1.  The serpins are an expanding superfamily of structurally similar but functionally diverse proteins. Evolution, mechanism of inhibition, novel functions, and a revised nomenclature.

Authors:  G A Silverman; P I Bird; R W Carrell; F C Church; P B Coughlin; P G Gettins; J A Irving; D A Lomas; C J Luke; R W Moyer; P A Pemberton; E Remold-O'Donnell; G S Salvesen; J Travis; J C Whisstock
Journal:  J Biol Chem       Date:  2001-07-02       Impact factor: 5.157

2.  Serpins in prokaryotes.

Authors:  James A Irving; Peter J M Steenbakkers; Arthur M Lesk; Huub J M Op den Camp; Robert N Pike; James C Whisstock
Journal:  Mol Biol Evol       Date:  2002-11       Impact factor: 16.240

3.  Kinetically controlled folding of the serpin plasminogen activator inhibitor 1.

Authors:  Z Wang; J Mottonen; E J Goldsmith
Journal:  Biochemistry       Date:  1996-12-24       Impact factor: 3.162

4.  Core structure of gp41 from the HIV envelope glycoprotein.

Authors:  D C Chan; D Fass; J M Berger; P S Kim
Journal:  Cell       Date:  1997-04-18       Impact factor: 41.582

5.  Probing the unfolding pathway of alpha1-antitrypsin.

Authors:  E L James; J C Whisstock; M G Gore; S P Bottomley
Journal:  J Biol Chem       Date:  1999-04-02       Impact factor: 5.157

6.  The Z type variation of human alpha 1-antitrypsin causes a protein folding defect.

Authors:  M H Yu; K N Lee; J Kim
Journal:  Nat Struct Biol       Date:  1995-05

7.  Metastability in the inhibitory mechanism of human alpha1-antitrypsin.

Authors:  H Im; E J Seo; M H Yu
Journal:  J Biol Chem       Date:  1999-04-16       Impact factor: 5.157

8.  The mechanism of alpha 1-antitrypsin polymerization probed by fluorescence spectroscopy.

Authors:  E L James; S P Bottomley
Journal:  Arch Biochem Biophys       Date:  1998-08-15       Impact factor: 4.013

9.  Trypsin complexed with alpha 1-proteinase inhibitor has an increased structural flexibility.

Authors:  G Kaslik; A Patthy; M Bálint; L Gráf
Journal:  FEBS Lett       Date:  1995-08-21       Impact factor: 4.124

10.  Analysis of prepro-alpha-lytic protease expression in Escherichia coli reveals that the pro region is required for activity.

Authors:  J L Silen; D Frank; A Fujishige; R Bone; D A Agard
Journal:  J Bacteriol       Date:  1989-03       Impact factor: 3.490

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  12 in total

1.  Metastability of papain and the molecular mechanism for its sequential acid-denaturation.

Authors:  Rosa Eréndira Fosado-Quiroz; Arturo Rojo-Domínguez
Journal:  Protein J       Date:  2011-03       Impact factor: 2.371

2.  Conformational properties of the disease-causing Z variant of α1-antitrypsin revealed by theory and experiment.

Authors:  Itamar Kass; Anja S Knaupp; Stephen P Bottomley; Ashley M Buckle
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

Review 3.  The metastable states of proteins.

Authors:  Debasish Kumar Ghosh; Akash Ranjan
Journal:  Protein Sci       Date:  2020-04-11       Impact factor: 6.725

4.  A computational modeling and molecular dynamics study of the Michaelis complex of human protein Z-dependent protease inhibitor (ZPI) and factor Xa (FXa).

Authors:  Vasudevan Chandrasekaran; Chang Jun Lee; Ping Lin; Robert E Duke; Lee G Pedersen
Journal:  J Mol Model       Date:  2009-01-27       Impact factor: 1.810

5.  α1-Antitrypsin Combines with Plasma Fatty Acids and Induces Angiopoietin-like Protein 4 Expression.

Authors:  Eileen Frenzel; Sabine Wrenger; Britta Brügger; Sandeep Salipalli; Stephan Immenschuh; Nupur Aggarwal; Ralf Lichtinghagen; Ravi Mahadeva; A Mario Q Marcondes; Charles A Dinarello; Tobias Welte; Sabina Janciauskiene
Journal:  J Immunol       Date:  2015-09-11       Impact factor: 5.422

6.  Fluorescence correlation spectroscopic study of serpin depolymerization by computationally designed peptides.

Authors:  Pramit Chowdhury; Wei Wang; Stacey Lavender; Michelle R Bunagan; Jason W Klemke; Jia Tang; Jeffrey G Saven; Barry S Cooperman; Feng Gai
Journal:  J Mol Biol       Date:  2007-03-21       Impact factor: 5.469

7.  The human serpin proteinase inhibitor-9 self-associates at physiological temperatures.

Authors:  Lauren N Benning; James C Whisstock; Jiuru Sun; Phillip I Bird; Stephen P Bottomley
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

8.  Serpin Inhibition Mechanism: A Delicate Balance between Native Metastable State and Polymerization.

Authors:  Mohammad Sazzad Khan; Poonam Singh; Asim Azhar; Asma Naseem; Qudsia Rashid; Mohammad Anaul Kabir; Mohamad Aman Jairajpuri
Journal:  J Amino Acids       Date:  2011-05-24

9.  The tempered polymerization of human neuroserpin.

Authors:  Rosina Noto; Maria Grazia Santangelo; Stefano Ricagno; Maria Rosalia Mangione; Matteo Levantino; Margherita Pezzullo; Vincenzo Martorana; Antonio Cupane; Martino Bolognesi; Mauro Manno
Journal:  PLoS One       Date:  2012-03-06       Impact factor: 3.240

Review 10.  An overview of the serpin superfamily.

Authors:  Ruby H P Law; Qingwei Zhang; Sheena McGowan; Ashley M Buckle; Gary A Silverman; Wilson Wong; Carlos J Rosado; Chris G Langendorf; Rob N Pike; Philip I Bird; James C Whisstock
Journal:  Genome Biol       Date:  2006-05-30       Impact factor: 13.583

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