Literature DB >> 14503880

Escherichia coli cystathionine gamma-synthase does not obey ping-pong kinetics. Novel continuous assays for the elimination and substitution reactions.

Susan M Aitken1, Daniel H Kim, Jack F Kirsch.   

Abstract

Cystathionine gamma-synthase (CGS) is a pyridoxal phosphate-dependent enzyme that catalyzes a gamma-replacement reaction, in which the succinyl group of an O-succinyl-L-homoserine (L-OSHS) is displaced by the thiol of L-cysteine to form L-cystathionine, in the first step of the bacterial transsulfuration pathway. The mechanism of Escherichia coli CGS (eCGS) is ordered with L-OSHS associating before L-Cys (k(catR)/K(mR)(L-OSHS) = 9.8 x 10(4) M(-1) s(-1), where the subscript R denotes the replacement reaction). The mechanism becomes ping-pong (k(catR)/K(mR)(L-OSHS) = 4.9 x 10(4) M(-1) s(-1)) at L-Cys concentrations lower than K(m)(L-Cys). The enzyme also catalyzes a competing gamma-elimination reaction, in which L-OSHS is hydrolyzed to succinate, NH(3), and alpha-ketobutyrate (k(catE)/K(mE)(L-OSHS) = 1350 +/- 90 M(-1) s(-1), where the subscript E denotes the elimination reaction). The k(cat)/K(m)(L-OSHS) versus pH profile of eCGS is bell-shaped for both reactions. The pH optimum and the pK(a) values for the acidic and basic limbs are 7.4, 6.8 +/- 0.1, and 8.0 +/- 0.1, respectively, for the elimination reaction and 7.8, 7.4 +/- 0.1, and 8.3 +/- 0.1, respectively, for the replacement reaction. The internal aldimine of eCGS remains protonated at pH <10.5, and the alpha-amino group of L-OSHS has a pK(a) of 9.71 +/- 0.01; therefore, neither limb of the k(cat)/K(m)(L-OSHS) versus pH profiles can be assigned to aldimine, or to L-OSHS prototropy. Novel continuous assays for the elimination reaction, employing D-2-hydroxyisocaproate dehydrogenase, and for the substitution reaction, employing cystathionine beta-lyase and L-lactate dehydrogenase as coupling enzymes, are described.

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Year:  2003        PMID: 14503880     DOI: 10.1021/bi035107o

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Characterization of site-directed mutants of residues R58, R59, D116, W340 and R372 in the active site of E. coli cystathionine beta-lyase.

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2.  Characterization of thermophilic archaeal isopentenyl phosphate kinases.

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3.  Exploration of the active site of Escherichia coli cystathionine γ-synthase.

Authors:  Allison F Jaworski; Pratik H Lodha; Adrienne L Manders; Susan M Aitken
Journal:  Protein Sci       Date:  2012-11       Impact factor: 6.725

4.  Structures and kinetics of Thermotoga maritima MetY reveal new insights into the predominant sulfurylation enzyme of bacterial methionine biosynthesis.

Authors:  Jodi L Brewster; Petr Pachl; James L O McKellar; Maria Selmer; Christopher J Squire; Wayne M Patrick
Journal:  J Biol Chem       Date:  2021-05-18       Impact factor: 5.157

Review 5.  Potential for development of an Escherichia coli-based biosensor for assessing bioavailable methionine: a review.

Authors:  Vesela I Chalova; Clifford A Froelich; Steven C Ricke
Journal:  Sensors (Basel)       Date:  2010-04-08       Impact factor: 3.576

6.  X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism involving concerted [1,5]-hydrogen sigmatropy in methionine γ-lyase.

Authors:  Dan Sato; Tomoo Shiba; Tsuyoshi Karaki; Wataru Yamagata; Tomoyoshi Nozaki; Takashi Nakazawa; Shigeharu Harada
Journal:  Sci Rep       Date:  2017-07-07       Impact factor: 4.379

7.  Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily.

Authors:  Kathryn E Muratore; Barbara E Engelhardt; John R Srouji; Michael I Jordan; Steven E Brenner; Jack F Kirsch
Journal:  Proteins       Date:  2013-06-17

8.  Natural product juglone targets three key enzymes from Helicobacter pylori: inhibition assay with crystal structure characterization.

Authors:  Yun-hua Kong; Liang Zhang; Zheng-yi Yang; Cong Han; Li-hong Hu; Hua-liang Jiang; Xu Shen
Journal:  Acta Pharmacol Sin       Date:  2008-07       Impact factor: 6.150

  8 in total

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