Literature DB >> 14503854

A large-insert porcine library with sevenfold genome coverage: a tool for positional cloning of candidate genes for major quantitative traits.

Jin Tae Jeon1, Eung Woo Park, Hyo Jeong Jeon, Tae Hun Kim, Kyung Tai Lee, Il Cheong Cheong.   

Abstract

A porcine genomic bacterial artificial chromosome (BAC) library was constructed by cloning partial EcoRI-digested high-molecular-weight DNA from a Korean native boar into the EcoRI site of the pBACe3.6 vector. The library consists of about 165,000 clones with an average insert size of 125 kb, representing about seven genome equivalents of coverage. About 130,000 clones (corresponding to fivefold genome coverage) were arrayed in 14 superpools which were organized as four dimensional pools. The library was further characterized by PCR screening of 38 microsatellite probes. An average of 4.84 positive clones were selected per marker. This indicates that the library is unbiased and will be useful for initiating fine scale physical mapping of major QTL in pigs. The library is being used to isolate specific clones by screening with type I and type II marker clones located in the QTL region affecting intramuscular fat content on SSC6.

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Year:  2003        PMID: 14503854

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  11 in total

Review 1.  Advanced technologies for genomic analysis in farm animals and its application for QTL mapping.

Authors:  Xiaoxiang Hu; Yu Gao; Chungang Feng; Qiuyue Liu; Xiaobo Wang; Zhuo Du; Qingsong Wang; Ning Li
Journal:  Genetica       Date:  2008-12-18       Impact factor: 1.082

2.  Polymorphisms of the 5' regulatory region of the porcine PPARGC1A gene and the effects on muscle fiber characteristics and meat quality.

Authors:  J M Kim; K S Lim; E A Lee; K T Lee; T H Kim; Y C Ryu; K C Hong
Journal:  Mol Biol Rep       Date:  2011-07-17       Impact factor: 2.316

3.  Genomic structure, expression and association study of the porcine FSD2.

Authors:  Kyu-Sang Lim; Kyung-Tai Lee; Si-Woo Lee; Han-Ha Chai; Gulwon Jang; Ki-Chang Hong; Tae-Hun Kim
Journal:  Mol Biol Rep       Date:  2016-06-27       Impact factor: 2.316

4.  Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies.

Authors:  Xiaoping Li; Sang-Wook Kim; Kyoung-Tag Do; You-Kyoung Ha; Yun-Mi Lee; Suk-Hee Yoon; Hee-Bal Kim; Jong-Joo Kim; Bong-Hwan Choi; Kwan-Suk Kim
Journal:  Mol Biol Rep       Date:  2010-11-24       Impact factor: 2.316

5.  The Pig Genome Database (PiGenome): an integrated database for pig genome research.

Authors:  Dajeong Lim; Yong-Min Cho; Kyung-Tai Lee; Yeonkyung Kang; Samsun Sung; Jungrye Nam; Eung-Woo Park; Sung-Jong Oh; Seok-Ki Im; Heebal Kim
Journal:  Mamm Genome       Date:  2008-12-10       Impact factor: 2.957

6.  Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study.

Authors:  Kyung-Tai Lee; Mi-Jeong Byun; Kyung-Soo Kang; Eung-Woo Park; Seung-Hwan Lee; Seoae Cho; Hyoyoung Kim; Kyu-Won Kim; Taeheon Lee; Jong-Eun Park; Woncheoul Park; Donghyun Shin; Hong-Seog Park; Jin-Tae Jeon; Bong-Hwan Choi; Gul-Won Jang; Sang-Haeng Choi; Dae-Won Kim; Dajeong Lim; Hae-Suk Park; Mi-Rim Park; Jurg Ott; Lawrence B Schook; Tae-Hun Kim; Heebal Kim
Journal:  PLoS One       Date:  2011-02-02       Impact factor: 3.240

7.  Construction and analysis of Siberian tiger bacterial artificial chromosome library with approximately 6.5-fold genome equivalent coverage.

Authors:  Changqing Liu; Chunyu Bai; Yu Guo; Dan Liu; Taofeng Lu; Xiangchen Li; Jianzhang Ma; Yuehui Ma; Weijun Guan
Journal:  Int J Mol Sci       Date:  2014-03-07       Impact factor: 5.923

8.  SINE indel polymorphism of AGL gene and association with growth and carcass traits in Landrace x Jeju Black pig F(2) population.

Authors:  Sang-Hyun Han; Kwang-Yun Shin; Sung-Soo Lee; Moon-Suck Ko; Dong Kee Jeong; Hong-Shik Oh; Byoung-Chul Yang; In-Cheol Cho
Journal:  Mol Biol Rep       Date:  2009-08-01       Impact factor: 2.316

9.  Construction and preliminary characterization analysis of Wuzhishan miniature pig bacterial artificial chromosome library with approximately 8-fold genome equivalent coverage.

Authors:  Changqing Liu; Yuo Guo; Taofeng Lu; Hongmei Wu; Risu Na; Xiangchen Li; Weijun Guan; Yuehui Ma
Journal:  Biomed Res Int       Date:  2013-04-18       Impact factor: 3.411

10.  A high utility integrated map of the pig genome.

Authors:  Sean J Humphray; Carol E Scott; Richard Clark; Brandy Marron; Clare Bender; Nick Camm; Jayne Davis; Andrew Jenks; Angela Noon; Manish Patel; Harminder Sehra; Fengtang Yang; Margarita B Rogatcheva; Denis Milan; Patrick Chardon; Gary Rohrer; Dan Nonneman; Pieter de Jong; Stacey N Meyers; Alan Archibald; Jonathan E Beever; Lawrence B Schook; Jane Rogers
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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