Literature DB >> 14502480

Improved estimation of the ranking probabilities in partial orders using random linear extensions by approximation of the mutual ranking probability.

Dorte Lerche1, Peter B Sørensen, Rainer Brüggemann.   

Abstract

The application of partial order theory and Hasse diagram technique in environmental science is getting increasing attention. One of the latest developments in the field of Hasse diagram technique is the use of random linear extensions to estimate ranking probabilities. In the original algorithm for estimating the ranking probability it is assumed that the order between two incomparable pair of objects can be chosen randomly. However, if the total set of linear extensions is considered there is a specific probability that one object will be larger than another, which can be far from 50%. In this study it is investigated if an approximation of the mutual ranking probability can improve the algorithm. Applying an approximation of the mutual ranking probability the estimation of the ranking probabilities are significantly improved. Using a test set of 39 partial orders with randomly chosen values the relative mean root square difference (MRSD) decrease in average from 7.9% to 2.2% and a maximum relative improvement of 90% can be found. In the most successful case the relative MRSD goes as low as 0.77%.

Entities:  

Year:  2003        PMID: 14502480     DOI: 10.1021/ci0300036

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  2 in total

1.  When drug discovery meets web search: Learning to Rank for ligand-based virtual screening.

Authors:  Wei Zhang; Lijuan Ji; Yanan Chen; Kailin Tang; Haiping Wang; Ruixin Zhu; Wei Jia; Zhiwei Cao; Qi Liu
Journal:  J Cheminform       Date:  2015-02-13       Impact factor: 5.514

Review 2.  The interplay between QSAR/QSPR studies and partial order ranking and formal concept analyses.

Authors:  Lars Carlsen
Journal:  Int J Mol Sci       Date:  2009-04-17       Impact factor: 6.208

  2 in total

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