Literature DB >> 14499128

Oscillatory metabolism of Saccharomyces cerevisiae: an overview of mechanisms and models.

Pratap R Patnaik1.   

Abstract

The budding yeast Saccharomyces cerevisiae displays steady oscillations in continuous cultures under certain conditions. Oscillatory responses are important both metabolically and in process applications. Although much information has become available, a definitive theory to explain and model these oscillations is yet to be formulated. Models of oscillatory cultivation have focussed primarily either on intracellular reactions or on transport processes coupled to substantially lumped intracellular kinetics. This review discusses the development of the models and the directions they provide for a comprehensive model of oscillatory metabolism.

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Year:  2003        PMID: 14499128     DOI: 10.1016/s0734-9750(03)00022-3

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  10 in total

1.  Cell cycle dynamics: clustering is universal in negative feedback systems.

Authors:  Nathan Breitsch; Gregory Moses; Erik Boczko; Todd Young
Journal:  J Math Biol       Date:  2014-05-10       Impact factor: 2.259

2.  Oscillatory ROP GTPase activation leads the oscillatory polarized growth of pollen tubes.

Authors:  Jae-Ung Hwang; Ying Gu; Yong-Jik Lee; Zhenbiao Yang
Journal:  Mol Biol Cell       Date:  2005-09-07       Impact factor: 4.138

3.  Calcium participates in feedback regulation of the oscillating ROP1 Rho GTPase in pollen tubes.

Authors:  An Yan; Guanshui Xu; Zhen-Biao Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-01       Impact factor: 11.205

4.  Oscillatory phosphorylation of yeast Fus3 MAP kinase controls periodic gene expression and morphogenesis.

Authors:  Zoe Hilioti; Walid Sabbagh; Saurabh Paliwal; Adriel Bergmann; Marcus D Goncalves; Lee Bardwell; Andre Levchenko
Journal:  Curr Biol       Date:  2008-10-30       Impact factor: 10.834

5.  Noise-induced dispersion and breakup of clusters in cell cycle dynamics.

Authors:  Xue Gong; Gregory Moses; Alexander B Neiman; Todd Young
Journal:  J Theor Biol       Date:  2014-03-30       Impact factor: 2.691

6.  The yin and yang of yeast transcription: elements of a global feedback system between metabolism and chromatin.

Authors:  Rainer Machné; Douglas B Murray
Journal:  PLoS One       Date:  2012-06-07       Impact factor: 3.240

7.  mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle.

Authors:  Nicola Soranzo; Mattia Zampieri; Lorenzo Farina; Claudio Altafini
Journal:  BMC Syst Biol       Date:  2009-02-06

8.  Characterizing the in vivo role of trehalose in Saccharomyces cerevisiae using the AGT1 transporter.

Authors:  Patrick A Gibney; Ariel Schieler; Jonathan C Chen; Joshua D Rabinowitz; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

9.  Impact of osmotic stress and ethanol inhibition in yeast cells on process oscillation associated with continuous very-high-gravity ethanol fermentation.

Authors:  Liang Wang; Xin-Qing Zhao; Chuang Xue; Feng-Wu Bai
Journal:  Biotechnol Biofuels       Date:  2013-09-16       Impact factor: 6.040

10.  Cell cycle dynamics in a response/signalling feedback system with a gap.

Authors:  Xue Gong; Richard Buckalew; Todd Young; Erik Boczko
Journal:  J Biol Dyn       Date:  2014       Impact factor: 2.179

  10 in total

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