Literature DB >> 14346087

METHODS FOR AUTOMATIC NUCLEOTIDE-SEQUENCE ANALYSIS. MULTICOMPONENT SPECTROPHOTOMETRIC ANALYSIS OF MIXTURES OF NUCLEIC ACID COMPONENTS BY A LEAST-SQUARES PROCEDURE.

S LEE, D MCMULLEN, G L BROWN, A R STOKES.   

Abstract

1. A theoretical analysis of the errors in multicomponent spectrophotometric analysis of nucleoside mixtures, by a least-squares procedure, has been made to obtain an expression for the error coefficient, relating the error in calculated concentration to the error in extinction measurements. 2. The error coefficients, which depend only on the ;library' of spectra used to fit the experimental curves, have been computed for a number of ;libraries' containing the following nucleosides found in s-RNA: adenosine, guanosine, cytidine, uridine, 5-ribosyluracil, 7-methylguanosine, 6-dimethylaminopurine riboside, 6-methylaminopurine riboside and thymine riboside. 3. The error coefficients have been used to determine the best conditions for maximum accuracy in the determination of the compositions of nucleoside mixtures. 4. Experimental determinations of the compositions of nucleoside mixtures have been made and the errors found to be consistent with those predicted by the theoretical analysis. 5. It has been demonstrated that, with certain precautions, the multicomponent spectrophotometric method described is suitable as a basis for automatic nucleotide-composition analysis of oligonucleotides containing nine nucleotides. Used in conjunction with continuous chromatography and flow chemical techniques, this method can be applied to the study of the sequence of s-RNA.

Entities:  

Keywords:  AUTOMATIC DATA PROCESSING; BIOCHEMISTRY; COMPUTERS; EXPERIMENTAL LAB STUDY; NUCLEOSIDES; RNA, SOLUBLE; SPECTROPHOTOMETRY; ULTRAVIOLET RAYS

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Substances:

Year:  1965        PMID: 14346087      PMCID: PMC1206512          DOI: 10.1042/bj0940314

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  14 in total

1.  FURTHER STUDIES ON THE ALKYLATION OF NUCLEIC ACIDS AND THEIR CONSTITUENT NUCLEOTIDES.

Authors:  P D LAWLEY; P BROOKES
Journal:  Biochem J       Date:  1963-10       Impact factor: 3.857

2.  A new enzyme of RNA synthesis: RNA methylase.

Authors:  E FLEISSNER; E BOREK
Journal:  Proc Natl Acad Sci U S A       Date:  1962-07-15       Impact factor: 11.205

3.  Vector analysis of ultraviolet mixture spectra: the composition of ribonucleic acid.

Authors:  J C REID; A W PRATT
Journal:  Biochem Biophys Res Commun       Date:  1960-10       Impact factor: 3.575

4.  The occurrence of methylated guanines in ribonucleic acids from several sources.

Authors:  J D SMITH; D B DUNN
Journal:  Biochem J       Date:  1959-06       Impact factor: 3.857

5.  The occurrence and distribution of thymine and three methylated-adenine bases in ribonucleic acids from several sources.

Authors:  J W LITTLEFIELD; D B DUNN
Journal:  Biochem J       Date:  1958-12       Impact factor: 3.857

6.  Pseudouridine, a carbon-carbon linked ribonucleoside in ribonucleic acids: isolation, structure, and chemical characteristics.

Authors:  W E COHN
Journal:  J Biol Chem       Date:  1960-05       Impact factor: 5.157

7.  Ribonucleic acids from yeast which contain a fifth nucleotide.

Authors:  F F DAVIS; F W ALLEN
Journal:  J Biol Chem       Date:  1957-08       Impact factor: 5.157

8.  An automatic method for colorimetric analysis.

Authors:  L T SKEGGS
Journal:  Am J Clin Pathol       Date:  1957-09       Impact factor: 2.493

9.  Spectrophotometric studies of nucleic acid derivatives and related compounds as a function of pH. II. Natural and synthetic pyrimidine nucleosides.

Authors:  J J FOX; D SHUGAR
Journal:  Biochim Biophys Acta       Date:  1952-10

10.  5-Ribosyl uracil, a carbon-carbon ribofuranosyl nucleoside in ribonucleic acids.

Authors:  W E COHN
Journal:  Biochim Biophys Acta       Date:  1959-04
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  1 in total

1.  Application of a spectrophotometric method to the determination of the composition of oligonucleotides obtained from cysteine transfer ribonucleic acid.

Authors:  N J Holness; G Atfield
Journal:  Biochem J       Date:  1976-10-01       Impact factor: 3.857

  1 in total

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