Literature DB >> 1422879

Clustering cDNA sequences.

J D Parsons1, S Brenner, M J Bishop.   

Abstract

A set of programs has been written to quantify the similarities between large numbers of cDNA sequences. This information is used to cluster similar sequences together. The main program can cluster thousands of cDNA sequences per day using a novel, computationally inexpensive algorithm. The clustering information is kept in a small index file so that disk storage requirements are negligible. Using this index file, subsidiary programs create various views and statistical summaries of the entire cDNA sequence collection.

Mesh：

Year:  1992        PMID： 1422879     DOI： 10.1093/bioinformatics/8.5.461

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  5 in total

1.  Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning.

Authors:  G Elgar; M S Clark; S Meek; S Smith; S Warner; Y J Edwards; N Bouchireb; A Cottage; G S Yeo; Y Umrania; G Williams; S Brenner
Journal:  Genome Res       Date:  1999-10       Impact factor: 9.043

2.  Fugu ESTs: new resources for transcription analysis and genome annotation.

Authors:  Melody S Clark; Yvonne J K Edwards; Dan Peterson; Sandra W Clifton; Amanda J Thompson; Masahide Sasaki; Yutaka Suzuki; Kiyoshi Kikuchi; Shugo Watabe; Koichi Kawakami; Sumio Sugano; Greg Elgar; Stephen L Johnson
Journal:  Genome Res       Date:  2003-11-12       Impact factor: 9.043

Review 3.  Reference cDNA library facilities available from European sources.

Authors:  M P Starkey; Y Umrania; C R Mundy; M J Bishop
Journal:  Mol Biotechnol       Date:  1998-02       Impact factor: 2.695

4.  Subtraction hybridisation and shot-gun sequencing: a new approach to identify symbiotic loci.

Authors:  X Perret; R Fellay; A J Bjourson; J E Cooper; S Brenner; W J Broughton
Journal:  Nucleic Acids Res       Date:  1994-04-25       Impact factor: 16.971

5.  Choosing non-redundant representative subsets of protein sequence data sets using submodular optimization.

Authors:  Maxwell W Libbrecht; Jeffrey A Bilmes; William Stafford Noble
Journal:  Proteins       Date:  2018-02-01
  5 in total

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