Literature DB >> 1422145

Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm.

J Kuszewski, M Nilges, A T Brünger.   

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Year:  1992        PMID： 1422145     DOI： 10.1007/bf02192799

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN： 0925-2738            Impact factor:   2.835


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  11 in total

1.  Structures of larger proteins in solution: three- and four-dimensional heteronuclear NMR spectroscopy.

Authors:  G M Clore; A M Gronenborn
Journal:  Science       Date:  1991-06-07       Impact factor: 47.728

2.  The sampling properties of some distance geometry algorithms applied to unconstrained polypeptide chains: a study of 1830 independently computed conformations.

Authors:  T F Havel
Journal:  Biopolymers       Date:  1990 Oct-Nov       Impact factor: 2.505

3.  Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations.

Authors:  M Nilges; G M Clore; A M Gronenborn
Journal:  FEBS Lett       Date:  1988-03-14       Impact factor: 4.124

4.  Distances as degrees of freedom.

Authors:  M A Hadwiger; G E Fox
Journal:  J Biomol Struct Dyn       Date:  1989-12

5.  Computational experience with an algorithm for tetrangle inequality bound smoothing.

Authors:  P L Easthope; T F Havel
Journal:  Bull Math Biol       Date:  1989       Impact factor: 1.758

6.  Three-dimensional structure of a DNA hairpin in solution: two-dimensional NMR studies and distance geometry calculations on d(CGCGTTTTCGCG).

Authors:  D R Hare; B R Reid
Journal:  Biochemistry       Date:  1986-09-09       Impact factor: 3.162

7.  Solution conformations of human growth hormone releasing factor: comparison of the restrained molecular dynamics and distance geometry methods for a system without long-range distance data.

Authors:  A T Brünger; G M Clore; A M Gronenborn; M Karplus
Journal:  Protein Eng       Date:  1987 Oct-Nov

8.  Limited sampling of conformational space by the distance geometry algorithm: implications for structures generated from NMR data.

Authors:  W J Metzler; D R Hare; A Pardi
Journal:  Biochemistry       Date:  1989-08-22       Impact factor: 3.162

9.  Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance.

Authors:  K Wüthrich; M Billeter; W Braun
Journal:  J Mol Biol       Date:  1983-10-05       Impact factor: 5.469

10.  Solution structures of the rabbit neutrophil defensin NP-5.

Authors:  A Pardi; D R Hare; M E Selsted; R D Morrison; D A Bassolino; A C Bach
Journal:  J Mol Biol       Date:  1988-06-05       Impact factor: 5.469
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  25 in total

1.  The solution structure of the Zalpha domain of the human RNA editing enzyme ADAR1 reveals a prepositioned binding surface for Z-DNA.

Authors:  M Schade; C J Turner; R Kühne; P Schmieder; K Lowenhaupt; A Herbert; A Rich; H Oschkinat
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

2.  Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation.

Authors:  J P Linge; M Nilges
Journal:  J Biomol NMR       Date:  1999-01       Impact factor: 2.835

3.  Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions.

Authors:  N Ferguson; J R Pires; F Toepert; C M Johnson; Y P Pan; R Volkmer-Engert; J Schneider-Mergener; V Daggett; H Oschkinat; A Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

4.  Structure of the N-terminal region of Haemophilus influenzae H10017: implications for function.

Authors:  L Yu; J Mack; P Hajduk; S W Fesik
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

5.  The solution structure of the anti-HIV chemokine vMIP-II.

Authors:  A C Liwang; Z X Wang; Y Sun; S C Peiper; P J Liwang
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

6.  Probing hydrogen bonds in the antibody-bound HIV-1 gp120 V3 loop by solid state NMR REDOR measurements.

Authors:  J J Balbach; J Yang; D P Weliky; P J Steinbach; V Tugarinov; J Anglister; R Tycko
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

7.  Extensive distance geometry calculations with different NOE calibrations: new criteria for structure selection applied to Sandostatin and BPTI.

Authors:  H Widmer; A Widmer; W Braun
Journal:  J Biomol NMR       Date:  1993-05       Impact factor: 2.835

8.  Optimisation of metric matrix embedding by genetic algorithms.

Authors:  A H van Kampen; L M Buydens; C B Lucasius; M J Blommers
Journal:  J Biomol NMR       Date:  1996-05       Impact factor: 2.835

9.  Structural mechanism of Bax inhibition by cytomegalovirus protein vMIA.

Authors:  Junhe Ma; Frank Edlich; Guillermo A Bermejo; Kristi L Norris; Richard J Youle; Nico Tjandra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-03       Impact factor: 11.205

10.  A self-organizing algorithm for modeling protein loops.

Authors:  Pu Liu; Fangqiang Zhu; Dmitrii N Rassokhin; Dimitris K Agrafiotis
Journal:  PLoS Comput Biol       Date:  2009-08-21       Impact factor: 4.475
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