Literature DB >> 1415253

A Monte Carlo method for combined segregation and linkage analysis.

S W Guo1, E A Thompson.   

Abstract

We introduce a Monte Carlo approach to combined segregation and linkage analysis of a quantitative trait observed in an extended pedigree. In conjunction with the Monte Carlo method of likelihood-ratio evaluation proposed by Thompson and Guo, the method provides for estimation and hypothesis testing. The greatest attraction of this approach is its ability to handle complex genetic models and large pedigrees. Two examples illustrate the practicality of the method. One is of simulated data on a large pedigree; the other is a reanalysis of published data previously analyzed by other methods.

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Year:  1992        PMID: 1415253      PMCID: PMC1682838     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  20 in total

1.  Genetic Analysis Workshop II: sib pair screening tests for linkage.

Authors:  R C Elston
Journal:  Genet Epidemiol       Date:  1984       Impact factor: 2.135

2.  Monte Carlo estimation of variance component models for large complex pedigrees.

Authors:  S W Guo; E A Thompson
Journal:  IMA J Math Appl Med Biol       Date:  1991

Review 3.  A random walk method for computing genetic location scores.

Authors:  K Lange; E Sobel
Journal:  Am J Hum Genet       Date:  1991-12       Impact factor: 11.025

4.  Segregation analysis of quantitative traits in nuclear families: comparison of three program packages.

Authors:  L W Konigsberg; C M Kammerer; J W MacCluer
Journal:  Genet Epidemiol       Date:  1989       Impact factor: 2.135

5.  Pedigree analysis for quantitative traits: variance components without matrix inversion.

Authors:  E A Thompson; R G Shaw
Journal:  Biometrics       Date:  1990-06       Impact factor: 2.571

6.  Estimating the power of a proposed linkage study for a complex genetic trait.

Authors:  L M Ploughman; M Boehnke
Journal:  Am J Hum Genet       Date:  1989-04       Impact factor: 11.025

7.  Analysis of family resemblance. 3. Complex segregation of quantitative traits.

Authors:  N E Morton; C J MacLean
Journal:  Am J Hum Genet       Date:  1974-07       Impact factor: 11.025

8.  A DNA probe for the LDL receptor gene is tightly linked to hypercholesterolemia in a pedigree with early coronary disease.

Authors:  M F Leppert; S J Hasstedt; T Holm; P O'Connell; L Wu; O Ash; R R Williams; R White
Journal:  Am J Hum Genet       Date:  1986-09       Impact factor: 11.025

9.  The investigation of linkage between a quantitative trait and a marker locus.

Authors:  J K Haseman; R C Elston
Journal:  Behav Genet       Date:  1972-03       Impact factor: 2.805

10.  Complex segregation analysis with pointers.

Authors:  J M Lalouel; N E Morton
Journal:  Hum Hered       Date:  1981       Impact factor: 0.444

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  53 in total

1.  Detection and integration of genotyping errors in statistical genetics.

Authors:  Eric Sobel; Jeanette C Papp; Kenneth Lange
Journal:  Am J Hum Genet       Date:  2002-01-08       Impact factor: 11.025

2.  ATLAS: a system to selectively identify human-specific L1 insertions.

Authors:  Richard M Badge; Reid S Alisch; John V Moran
Journal:  Am J Hum Genet       Date:  2003-03-11       Impact factor: 11.025

3.  A Monte Carlo method for Bayesian analysis of linkage between single markers and quantitative trait loci. I. Methodology.

Authors:  G Thaller; I Hoeschele
Journal:  Theor Appl Genet       Date:  1996-11       Impact factor: 5.699

4.  Estimating major gene effects with partial information using Gibbs sampling.

Authors:  R Pong-Wong; J A Woolliams
Journal:  Theor Appl Genet       Date:  1996-11       Impact factor: 5.699

5.  Use of deterministic sampling for exploring likelihoods in linkage analysis for quantitative traits.

Authors:  M J Mackinnon; S van der Beek; B P Kinghorn
Journal:  Theor Appl Genet       Date:  1996-01       Impact factor: 5.699

6.  Application of Gibbs sampling for inference in a mixed major gene-polygenic inheritance model in animal populations.

Authors:  L L Janss; R Thompson; A M Van Arendonk
Journal:  Theor Appl Genet       Date:  1995-11       Impact factor: 5.699

7.  Maximum likelihood analysis of rare binary traits under different modes of inheritance.

Authors:  G Thaller; L Dempfle; I Hoeschele
Journal:  Genetics       Date:  1996-08       Impact factor: 4.562

8.  The use of multiple markers in a Bayesian method for mapping quantitative trait loci.

Authors:  P Uimari; G Thaller; I Hoeschele
Journal:  Genetics       Date:  1996-08       Impact factor: 4.562

9.  Detection of quantitative trait loci in outbred populations with incomplete marker data.

Authors:  M C Bink; J A Van Arendonk
Journal:  Genetics       Date:  1999-01       Impact factor: 4.562

10.  Novel use of derived genotype probabilities to discover significant dominance effects for milk production traits in dairy cattle.

Authors:  Teide-Jens Boysen; Claas Heuer; Jens Tetens; Fritz Reinhardt; Georg Thaller
Journal:  Genetics       Date:  2012-12-05       Impact factor: 4.562

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