Literature DB >> 1406321

Modeling supercoiled DNA.

A V Vologodskii1, M D Frank-Kamenetskii.   

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Year:  1992        PMID： 1406321     DOI： 10.1016/0076-6879(92)11025-e

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  11 in total

1.  Gapped DNA and cyclization of short DNA fragments.

Authors:  Quan Du; Maria Vologodskaia; Heiko Kuhn; Maxim Frank-Kamenetskii; Alexander Vologodskii
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

2.  Braiding DNA: experiments, simulations, and models.

Authors:  G Charvin; A Vologodskii; D Bensimon; V Croquette
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

3.  Cyclization of short DNA fragments and bending fluctuations of the double helix.

Authors:  Quan Du; Chaim Smith; Nahum Shiffeldrim; Maria Vologodskaia; Alexander Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

4.  Brownian dynamics simulation of knot diffusion along a stretched DNA molecule.

Authors:  Alexander Vologodskii
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

5.  Determining protein-induced DNA bending in force-extension experiments: theoretical analysis.

Authors:  Alexander Vologodskii
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

6.  Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases.

Authors:  Xia Hua; Diana Nguyen; Barath Raghavan; Javier Arsuaga; Mariel Vazquez
Journal:  Topol Appl       Date:  2007-04-01       Impact factor: 0.617

Review 7.  The dynamic interplay between DNA topoisomerases and DNA topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-11-14

8.  Modulation of intramolecular interactions in superhelical DNA by curved sequences: a Monte Carlo simulation study.

Authors:  K V Klenin; M D Frank-Kamenetskii; J Langowski
Journal:  Biophys J       Date:  1995-01       Impact factor: 4.033

9.  The Dynamic Interplay Between DNA Topoisomerases and DNA Topology.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Biophys Rev       Date:  2016-07-02

10.  Structure based sequence dependent stiffness scale for trinucleotides: a direct method.

Authors:  M M Gromiha
Journal:  J Biol Phys       Date:  2000-03       Impact factor: 1.365
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