Literature DB >> 1398128

Derivation of a mathematical expression useful for the construction of complete genomic libraries.

J Zilsel1, P H Ma, J T Beatty.   

Abstract

We present and derive a formula that is useful for the design and evaluation of gene cloning experiments in which a complete gene library of the entire genome of an organism is desired. The formula n = ln(1-phi f)/ln(1-f) (in which n is the number of recombinant clones required to ensure a probability, phi, of obtaining at least one of each of all possible gene sequences, and f is the fraction of the genome contained in an average-sized DNA fragment) applies to construction of libraries, in which at least one copy of all the genetic information of a genome is required. The use of this formula for quantitative evaluation of genomic libraries should give greater assurance that a given library would be complete.

Mesh:

Year:  1992        PMID: 1398128     DOI: 10.1016/0378-1119(92)90013-f

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  12 in total

1.  Multiple genes repress motility in uropathogenic Escherichia coli constitutively expressing type 1 fimbriae.

Authors:  Amy N Simms; Harry L T Mobley
Journal:  J Bacteriol       Date:  2008-03-21       Impact factor: 3.490

2.  Linearmycins Activate a Two-Component Signaling System Involved in Bacterial Competition and Biofilm Morphology.

Authors:  Reed M Stubbendieck; Paul D Straight
Journal:  J Bacteriol       Date:  2017-08-22       Impact factor: 3.490

3.  Complementation of a Chlamydomonas reinhardtii mutant using a genomic cosmid library.

Authors:  S Purton; J D Rochaix
Journal:  Plant Mol Biol       Date:  1994-02       Impact factor: 4.076

4.  Genome-wide detection of fitness genes in uropathogenic Escherichia coli during systemic infection.

Authors:  Sargurunathan Subashchandrabose; Sara N Smith; Rachel R Spurbeck; Monica M Kole; Harry L T Mobley
Journal:  PLoS Pathog       Date:  2013-12-05       Impact factor: 6.823

5.  Acinetobacter baumannii Genes Required for Bacterial Survival during Bloodstream Infection.

Authors:  Sargurunathan Subashchandrabose; Sara Smith; Valerie DeOrnellas; Sebastien Crepin; Monica Kole; Carina Zahdeh; Harry L T Mobley
Journal:  mSphere       Date:  2015-11-04       Impact factor: 4.389

6.  Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization.

Authors:  Elena Capel; Aldert L Zomer; Thomas Nussbaumer; Christine Bole; Brigitte Izac; Eric Frapy; Julie Meyer; Haniaa Bouzinba-Ségard; Emmanuelle Bille; Anne Jamet; Anne Cavau; Franck Letourneur; Sandrine Bourdoulous; Thomas Rattei; Xavier Nassif; Mathieu Coureuil
Journal:  MBio       Date:  2016-08-02       Impact factor: 7.867

7.  Genome-wide transposon mutagenesis of Proteus mirabilis: Essential genes, fitness factors for catheter-associated urinary tract infection, and the impact of polymicrobial infection on fitness requirements.

Authors:  Chelsie E Armbruster; Valerie Forsyth-DeOrnellas; Alexandra O Johnson; Sara N Smith; Lili Zhao; Weisheng Wu; Harry L T Mobley
Journal:  PLoS Pathog       Date:  2017-06-14       Impact factor: 6.823

8.  Genome-wide screen for cell growth regulators in fission yeast.

Authors:  Louise Weston; Jessica Greenwood; Paul Nurse
Journal:  J Cell Sci       Date:  2017-05-05       Impact factor: 5.285

9.  The lytic transglycosylase MltB connects membrane homeostasis and in vivo fitness of Acinetobacter baumannii.

Authors:  Sébastien Crépin; Elizabeth N Ottosen; Katharina Peters; Sara N Smith; Stephanie D Himpsl; Waldemar Vollmer; Harry L T Mobley
Journal:  Mol Microbiol       Date:  2018-09-28       Impact factor: 3.501

10.  Transposon Insertion Site Sequencing of Providencia stuartii: Essential Genes, Fitness Factors for Catheter-Associated Urinary Tract Infection, and the Impact of Polymicrobial Infection on Fitness Requirements.

Authors:  Alexandra O Johnson; Valerie Forsyth; Sara N Smith; Brian S Learman; Aimee L Brauer; Ashley N White; Lili Zhao; Weisheng Wu; Harry L T Mobley; Chelsie E Armbruster
Journal:  mSphere       Date:  2020-05-27       Impact factor: 4.389

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.