Literature DB >> 1387205

Requirements for U2 snRNP addition to yeast pre-mRNA.

X C Liao1, H V Colot, Y Wang, M Rosbash.   

Abstract

The in vitro spliceosome assembly pathway is conserved between yeast and mammals as U1 and U2 snRNPs associate with the pre-mRNA prior to U5 and U4/U6 snRNPs. In yeast, U1 snRNP-pre-mRNA complexes are the first splicing complexes visualized on native gels, and association with U1 snRNP apparently commits pre-mRNA to the spliceosome assembly pathway. The current study addresses U2 snRNP addition to commitment complexes. We show that commitment complex formation is relatively slow and does not require ATP, whereas U2 snRNP adds to the U1 snRNP complexes in a reaction that is relatively fast and requires ATP or hydrolyzable ATP analogs. In vitro spliceosome assembly was assayed in extracts derived from strains containing several U1 sRNA mutations. The results were consistent with a critical role for U1 snRNP in early complex formation. A mutation that disrupts the base-pairing between the 5' end of U1 snRNA and the 5' splice site allows some U2 snRNP addition to bypass the ATP requirement, suggesting that ATP may be used to destabilize certain U1 snRNP:pre-mRNA interactions to allow subsequent U2 snRNP addition.

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Year:  1992        PMID: 1387205      PMCID: PMC334131          DOI: 10.1093/nar/20.16.4237

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  40 in total

1.  Antisense probes containing 2-aminoadenosine allow efficient depletion of U5 snRNP from HeLa splicing extracts.

Authors:  G M Lamm; B J Blencowe; B S Sproat; A M Iribarren; U Ryder; A I Lamond
Journal:  Nucleic Acids Res       Date:  1991-06-25       Impact factor: 16.971

2.  An ATP-independent complex commits pre-mRNA to the mammalian spliceosome assembly pathway.

Authors:  S Michaud; R Reed
Journal:  Genes Dev       Date:  1991-12       Impact factor: 11.361

3.  Protein composition of mammalian spliceosomes assembled in vitro.

Authors:  R Reed
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

4.  Mutations in yeast U5 snRNA alter the specificity of 5' splice-site cleavage.

Authors:  A Newman; C Norman
Journal:  Cell       Date:  1991-04-05       Impact factor: 41.582

5.  Assemblage of the prespliceosome complex with separated fractions isolated from HeLa cells.

Authors:  R Pruzan; H Furneaux; P Lassota; G Y Hong; J Hurwitz
Journal:  J Biol Chem       Date:  1990-02-15       Impact factor: 5.157

6.  The yeast PRP6 gene encodes a U4/U6 small nuclear ribonucleoprotein particle (snRNP) protein, and the PRP9 gene encodes a protein required for U2 snRNP binding.

Authors:  N Abovich; P Legrain; M Rosbash
Journal:  Mol Cell Biol       Date:  1990-12       Impact factor: 4.272

7.  Universally conserved and yeast-specific U1 snRNA sequences are important but not essential for U1 snRNP function.

Authors:  X L Liao; L Kretzner; B Seraphin; M Rosbash
Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

8.  Recognition of the TACTAAC box during mRNA splicing in yeast involves base pairing to the U2-like snRNA.

Authors:  R Parker; P G Siliciano; C Guthrie
Journal:  Cell       Date:  1987-04-24       Impact factor: 41.582

9.  Genetic depletion indicates a late role for U5 snRNP during in vitro spliceosome assembly.

Authors:  B Séraphin; N Abovich; M Rosbash
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

10.  The yeast branchpoint sequence is not required for the formation of a stable U1 snRNA-pre-mRNA complex and is recognized in the absence of U2 snRNA.

Authors:  B Séraphin; M Rosbash
Journal:  EMBO J       Date:  1991-05       Impact factor: 11.598

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  29 in total

1.  Sequences upstream of the branch site are required to form helix II between U2 and U6 snRNA in a trans-splicing reaction.

Authors:  G Ast; T Pavelitz; A M Weiner
Journal:  Nucleic Acids Res       Date:  2001-04-15       Impact factor: 16.971

2.  Initial recognition of U12-dependent introns requires both U11/5' splice-site and U12/branchpoint interactions.

Authors:  M J Frilander; J A Steitz
Journal:  Genes Dev       Date:  1999-04-01       Impact factor: 11.361

3.  The ATP requirement for U2 snRNP addition is linked to the pre-mRNA region 5' to the branch site.

Authors:  C M Newnham; C C Query
Journal:  RNA       Date:  2001-09       Impact factor: 4.942

4.  RPL30 regulation of splicing reveals distinct roles for Cbp80 in U1 and U2 snRNP cotranscriptional recruitment.

Authors:  Mireia Bragulat; Markus Meyer; Sara Macías; Maria Camats; Mireia Labrador; Josep Vilardell
Journal:  RNA       Date:  2010-08-27       Impact factor: 4.942

5.  Visualizing the splicing of single pre-mRNA molecules in whole cell extract.

Authors:  Daniel J Crawford; Aaron A Hoskins; Larry J Friedman; Jeff Gelles; Melissa J Moore
Journal:  RNA       Date:  2007-11-19       Impact factor: 4.942

6.  Uncoupling two functions of the U1 small nuclear ribonucleoprotein particle during in vitro splicing.

Authors:  S D Seiwert; J A Steitz
Journal:  Mol Cell Biol       Date:  1993-06       Impact factor: 4.272

7.  The yeast U2A'/U2B complex is required for pre-spliceosome formation.

Authors:  F Caspary; B Séraphin
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598

8.  The branchpoint residue is recognized during commitment complex formation before being bulged out of the U2 snRNA-pre-mRNA duplex.

Authors:  E Pascolo; B Séraphin
Journal:  Mol Cell Biol       Date:  1997-07       Impact factor: 4.272

9.  Association of U2 snRNP with the spliceosomal complex E.

Authors:  W Hong; M Bennett; Y Xiao; R Feld Kramer; C Wang; R Reed
Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

10.  Commitment of yeast pre-mRNA to the splicing pathway requires a novel U1 small nuclear ribonucleoprotein polypeptide, Prp39p.

Authors:  S R Lockhart; B C Rymond
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

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