Literature DB >> 1381612

Quantitation of physical-chemical properties of the aqueous phase inside the phoE ionic channel.

M Gutman1, Y Tsfadia, A Masad, E Nachliel.   

Abstract

The anion-specific channel of the phoE porine is a miniature body of water surrounded by peptide walls. The physical and chemical properties of the water in such a microscopic space were measured by monitoring the dynamics of a well-studied reaction--the protolytic dissociation of a strong acid. To attain this purpose, we allowed pyranine (8-hydroxypyrene-1,3,6-trisulfonate) to bind to the anion-specific channel. The dye is bound, with a 1:1 stoichiometry, with a delta G = -9.5 kcal/mol. Photoexcitation of the dye, to its first electronic singlet state (phi OH*), renders it very acidic and the hydroxyl proton dissociates to H+ and excited anion (phi O*-). We employed single photon-counting time-resolved fluorimetry, to monitor the reversible dissociation of pyranine as it proceeds within the channel and reconstructed the observed signal by a numerical integration of the differential diffusion equation pertinent for a proton within the channel. The most characteristic feature of the water-filled channel, is the intensified electrostatic interactions attained by the low dielectric constant of the diffusion space, epsilon eff = 24. For this reason, the electric field of a few positive charges is sufficient to ensure that an anion entering the channel will be effectively sucked in. The interaction of the water molecules with the peptide structure forming the channel affects the physical properties of the water. Their capacity to conduct proton, quantitated by the protons diffusion coefficient (4.5.10(-5) cm2/s), is reduced by 50% with respect to that of bulk water. The activity of the water in the channel is reduced to alpha H2O = 0.966. These observation are in accord with our previous studies of water in small defined cavities in proteins.

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Year:  1992        PMID: 1381612     DOI: 10.1016/0005-2736(92)90077-y

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  17 in total

1.  Proton transfer dynamics at the membrane/water interface: dependence on the fixed and mobile pH buffers, on the size and form of membrane particles, and on the interfacial potential barrier.

Authors:  Dmitry A Cherepanov; Wolfgang Junge; Armen Y Mulkidjanian
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

2.  Gauging of the PhoE channel by a single freely diffusing proton.

Authors:  Sharron Bransburg-Zabary; Esther Nachliel; Menachem Gutman
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

3.  Molecular dynamics of a protein surface: ion-residues interactions.

Authors:  Ran Friedman; Esther Nachliel; Menachem Gutman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

4.  Estimating the dielectric constant of the channel protein and pore.

Authors:  Jin Aun Ng; Taira Vora; Vikram Krishnamurthy; Shin-Ho Chung
Journal:  Eur Biophys J       Date:  2007-09-18       Impact factor: 1.733

Review 5.  Voltage-activated hydrogen ion currents.

Authors:  T E DeCoursey; V V Cherny
Journal:  J Membr Biol       Date:  1994-09       Impact factor: 1.843

6.  Study of ionic currents across a model membrane channel using Brownian dynamics.

Authors:  S H Chung; M Hoyles; T Allen; S Kuyucak
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

7.  Dynamic properties of Na+ ions in models of ion channels: a molecular dynamics study.

Authors:  G R Smith; M S Sansom
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

8.  Porins of Escherichia coli: unidirectional gating by pressure.

Authors:  A C Le Dain; C C Häse; J Tommassen; B Martinac
Journal:  EMBO J       Date:  1996-07-15       Impact factor: 11.598

9.  The dielectric properties of water within model transbilayer pores.

Authors:  M S Sansom; G R Smith; C Adcock; P C Biggin
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

10.  Protonation dynamics of the alpha-toxin ion channel from spectral analysis of pH-dependent current fluctuations.

Authors:  J J Kasianowicz; S M Bezrukov
Journal:  Biophys J       Date:  1995-07       Impact factor: 4.033

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