Literature DB >> 1379081

Bayesian restoration of single-channel patch clamp recordings.

D R Fredkin1, J A Rice.   

Abstract

The technique of patch clamp recording makes possible the measurement of current flowing through a single ion channel in a cell membrane. Examination of such recordings suggests that the current is quantal in nature, alternating in a seemingly random manner between "on" and "off," but the recordings are corrupted by noise from a variety of sources. In this paper we propose and illustrate methods for restoring the underlying quantal signal from such noisy measurements. The methods use a Markov chain prior distribution for the underlying quantal process and base the restoration on the resulting posterior distribution.

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Year:  1992        PMID: 1379081

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  12 in total

1.  Bayesian restoration of ion channel records using hidden Markov models.

Authors:  R Rosales; J A Stark; W J Fitzgerald; S B Hladky
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

2.  Hidden Markov modeling for single channel kinetics with filtering and correlated noise.

Authors:  F Qin; A Auerbach; F Sachs
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

3.  Applying hidden Markov models to the analysis of single ion channel activity.

Authors:  L Venkataramanan; F J Sigworth
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

4.  Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling.

Authors:  Feng Qin
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

5.  Hidden Markov analysis of improved bandwidth mechanosensitive ion channel data.

Authors:  Ibrahim M Almanjahie; R Nazim Khan; Robin K Milne; Takeshi Nomura; Boris Martinac
Journal:  Eur Biophys J       Date:  2015-08-02       Impact factor: 1.733

6.  Inositol trisphosphate receptor and ion channel models based on single-channel data.

Authors:  Elan Gin; Larry E Wagner; David I Yule; James Sneyd
Journal:  Chaos       Date:  2009-09       Impact factor: 3.642

7.  Estimation of kinetic rate constants from multi-channel recordings by a direct fit of the time series.

Authors:  A Albertsen; U P Hansen
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

8.  MCMC estimation of Markov models for ion channels.

Authors:  Ivo Siekmann; Larry E Wagner; David Yule; Colin Fox; David Bryant; Edmund J Crampin; James Sneyd
Journal:  Biophys J       Date:  2011-04-20       Impact factor: 4.033

9.  Estimating single-channel kinetic parameters from idealized patch-clamp data containing missed events.

Authors:  F Qin; A Auerbach; F Sachs
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

10.  Level detection in ion channel records via idealization by statistical filtering and likelihood optimization.

Authors:  V P Pastushenko; H Schindler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1997-01-29       Impact factor: 6.237

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