Literature DB >> 1373235

Mutations which alter splicing in the human hypoxanthine-guanine phosphoribosyltransferase gene.

H Steingrimsdottir1, G Rowley, G Dorado, J Cole, A R Lehmann.   

Abstract

A large proportion of mutations at the human hprt locus result in aberrant splicing of the hprt mRNA. We have been able to relate the mutation to the splicing abnormality in 30 of these mutants. Mutations at the splice acceptor sites of introns 4, 6 and 7 result in splicing out of the whole of the downstream exons, whereas in introns 1, 7 or 8 a cryptic site in the downstream exon can be used. Mutations in the donor site of introns 1 and 5 result in the utilisation of cryptic sites further downstream, whereas in the other introns, the upstream exons are spliced out. Our most unexpected findings were mutations in the middle of exons 3 and 8 which resulted in splicing out of these exons in part of the mRNA populations. Our results have enabled us to assess current models of mRNA splicing. They emphasize the importance of the polypyrimidine tract in splice acceptor sites, they support the role of the exon as the unit of assembly for splicing, and they are consistent with a model proposing a stem-loop structure for exon 8 in the hprt mRNA.

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Year:  1992        PMID: 1373235      PMCID: PMC312159          DOI: 10.1093/nar/20.6.1201

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  53 in total

1.  Cell cycle-dependent strand bias for UV-induced mutations in the transcribed strand of excision repair-proficient human fibroblasts but not in repair-deficient cells.

Authors:  W G McGregor; R H Chen; L Lukash; V M Maher; J J McCormick
Journal:  Mol Cell Biol       Date:  1991-04       Impact factor: 4.272

2.  DNA sequence analysis of in vivo hprt mutation in human T lymphocytes.

Authors:  L Recio; J Cochrane; D Simpson; T R Skopek; J P O'Neill; J A Nicklas; R J Albertini
Journal:  Mutagenesis       Date:  1990-09       Impact factor: 3.000

3.  Alternative splicing patterns in an aberrantly rearranged immunoglobulin kappa-light-chain gene.

Authors:  S K Sikder; E A Kabat; S L Morrison
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

4.  Exon definition may facilitate splice site selection in RNAs with multiple exons.

Authors:  B L Robberson; G J Cote; S M Berget
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

5.  Exon mutations that affect the choice of splice sites used in processing the SV40 late transcripts.

Authors:  M B Somasekhar; J E Mertz
Journal:  Nucleic Acids Res       Date:  1985-08-12       Impact factor: 16.971

6.  Analysis of point mutations induced by ultraviolet light in human cells.

Authors:  P Keohavong; V F Liu; W G Thilly
Journal:  Mutat Res       Date:  1991-07       Impact factor: 2.433

7.  The spfash mouse: a missense mutation in the ornithine transcarbamylase gene also causes aberrant mRNA splicing.

Authors:  P E Hodges; L E Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

8.  Mutations affecting RNA splicing in man are detected more frequently in somatic than in germ cells.

Authors:  A M Rossi; J C Thijssen; A D Tates; H Vrieling; A T Natarajan; P H Lohman; A A van Zeeland
Journal:  Mutat Res       Date:  1990-08       Impact factor: 2.433

9.  Site specificity of N-methyl-N-nitrosourea-induced transition mutations in the hprt gene.

Authors:  L H Zhang; D Jenssen
Journal:  Carcinogenesis       Date:  1991-10       Impact factor: 4.944

10.  Toxicity, mutagenicity, and mutational spectra of N-ethyl-N-nitrosourea in human cell lines with different DNA repair phenotypes.

Authors:  S M Bronstein; J E Cochrane; T R Craft; J A Swenberg; T R Skopek
Journal:  Cancer Res       Date:  1991-10-01       Impact factor: 12.701

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  41 in total

Review 1.  Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression.

Authors:  Zhi-Ming Zheng
Journal:  J Biomed Sci       Date:  2004 May-Jun       Impact factor: 8.410

2.  Molecular basis of the human dihydropyrimidine dehydrogenase deficiency and 5-fluorouracil toxicity.

Authors:  X Wei; H L McLeod; J McMurrough; F J Gonzalez; P Fernandez-Salguero
Journal:  J Clin Invest       Date:  1996-08-01       Impact factor: 14.808

3.  A C2055T transition in exon 8 of the ATP7A gene is associated with exon skipping in an occipital horn syndrome family.

Authors:  N Ronce; M P Moizard; L Robb; A Toutain; L Villard; C Moraine
Journal:  Am J Hum Genet       Date:  1997-07       Impact factor: 11.025

4.  Molecular and biochemical characterization of xrs mutants defective in Ku80.

Authors:  B K Singleton; A Priestley; H Steingrimsdottir; D Gell; T Blunt; S P Jackson; A R Lehmann; P A Jeggo
Journal:  Mol Cell Biol       Date:  1997-03       Impact factor: 4.272

Review 5.  The regulation of splice-site selection, and its role in human disease.

Authors:  T A Cooper; W Mattox
Journal:  Am J Hum Genet       Date:  1997-08       Impact factor: 11.025

6.  Nearby stop codons in exons of the neurofibromatosis type 1 gene are disparate splice effectors.

Authors:  S Hoffmeyer; P Nürnberg; H Ritter; R Fahsold; W Leistner; D Kaufmann; W Krone
Journal:  Am J Hum Genet       Date:  1998-02       Impact factor: 11.025

7.  Abnormal muscle development in the heldup3 mutant of Drosophila melanogaster is caused by a splicing defect affecting selected troponin I isoforms.

Authors:  J A Barbas; J Galceran; L Torroja; A Prado; A Ferrús
Journal:  Mol Cell Biol       Date:  1993-03       Impact factor: 4.272

8.  Presence of negative and positive cis-acting RNA splicing elements within and flanking the first tat coding exon of human immunodeficiency virus type 1.

Authors:  B A Amendt; D Hesslein; L J Chang; C M Stoltzfus
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

9.  Genomic features defining exonic variants that modulate splicing.

Authors:  Adam Woolfe; James C Mullikin; Laura Elnitski
Journal:  Genome Biol       Date:  2010-02-16       Impact factor: 13.583

10.  Frame-disrupting mutations elicit pre-mRNA accumulation independently of frame disruption.

Authors:  J Saadi Imam; Jayanthi P Gudikote; Wai-Kin Chan; Miles F Wilkinson
Journal:  Nucleic Acids Res       Date:  2009-12-09       Impact factor: 16.971

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