Literature DB >> 1353371

Solution structure of the Lewis x oligosaccharide determined by NMR spectroscopy and molecular dynamics simulations.

K E Miller1, C Mukhopadhyay, P Cagas, C A Bush.   

Abstract

The Lewis x (Lex) determinant is a trisaccharide fragment that has been implicated as a specific differentiation antigen, as a tumor antigen, and as a key component of the ligand for the endothelial leukocyte adhesion molecule, ELAM-1. High-resolution nuclear magnetic resonance spectroscopy shows it to have a relatively rigid structure. Only a small range of glycosidic dihedral angles in the trisaccharide produce simulated nuclear Overhauser effect spectra agreeing with data measured for the human milk pentasaccharide, lacto-N-fucopentaose-3, which contains the Lex determinant. Independently, the same average structure for the Lex determinant arises from in vacuo molecular dynamics simulations. The proposed conformation of the Lex trisaccharide is very similar to that recently determined for the closely related Lea trisaccharide. In agreement with the recent finding that both sialylated Lea and Lex react with ELAM-1, the results presented here show that the Lea and Lex determinants contain very similar carbohydrate domains.

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Year:  1992        PMID: 1353371     DOI: 10.1021/bi00144a009

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Application of homonuclear 3D NMR experiments and 1D analogs to study the conformation of sialyl Lewis(x) bound to E-selectin.

Authors:  K Scheffler; J R Brisson; R Weisemann; J L Magnani; W T Wong; B Ernst; T Peters
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

2.  Assessing glycosidic linkage flexibility: conformational analysis of the repeating trisaccharide unit of Aeromonas salmonicida.

Authors:  T Peters; T Weimar
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

3.  Solution structure of a Lewis(x) analogue by off-resonance 1H NMR spectroscopy without use of an internal distance reference.

Authors:  P Berthault; N Birlirakis; G Rubinstenn; P Sinaÿ; H Desvaux
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

4.  Modeling of the three-dimensional structure of polypeptides in solution using potential-scaled/hot-solute molecular dynamics.

Authors:  H Tsujishita; I Moriguchi; S Hirono
Journal:  Biophys J       Date:  1994-06       Impact factor: 4.033

5.  Heteronuclear NMR studies of 13C-labeled yeast cell wall beta-glucan oligosaccharides.

Authors:  L Yu; R Goldman; P Sullivan; G F Walker; S W Fesik
Journal:  J Biomol NMR       Date:  1993-07       Impact factor: 2.835

6.  Conformations and internal mobility of a glycopeptide derived from bromelain using molecular dynamics simulations and NOESY analysis.

Authors:  J P Lommerse; L M Kroon-Batenburg; J Kroon; J P Kamerling; J F Vliegenthart
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

7.  Size, Kinetics, and Free Energy of Clusters Formed by Ultraweak Carbohydrate-Carbohydrate Bonds.

Authors:  Hannes Witt; Filip Savić; Marieelen Oelkers; Shahid I Awan; Daniel B Werz; Burkhard Geil; Andreas Janshoff
Journal:  Biophys J       Date:  2016-04-12       Impact factor: 4.033

8.  Computer simulation of histo-blood group oligosaccharides: energy maps of all constituting disaccharides and potential energy surfaces of 14 ABH and Lewis carbohydrate antigens.

Authors:  A Imberty; E Mikros; J Koca; R Mollicone; R Oriol; S Pérez
Journal:  Glycoconj J       Date:  1995-06       Impact factor: 2.916

9.  Synthesis of 4" manipulated Lewis X trisaccharide analogues.

Authors:  Christopher J Moore; France-Isabelle Auzanneau
Journal:  Beilstein J Org Chem       Date:  2012-07-23       Impact factor: 2.883

Review 10.  Structural insights into what glycan arrays tell us about how glycan-binding proteins interact with their ligands.

Authors:  Maureen E Taylor; Kurt Drickamer
Journal:  Glycobiology       Date:  2009-06-15       Impact factor: 4.313

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