Literature DB >> 1348233

Sequence and organization of 5S ribosomal RNA-encoding genes of Arabidopsis thaliana.

B R Campell1, Y Song, T E Posch, C A Cullis, C D Town.   

Abstract

We have isolated a genomic clone containing Arabidopsis thaliana 5S ribosomal RNA (rRNA)-encoding genes (rDNA) by screening an A. thaliana library with a 5S rDNA probe from flax. The clone isolated contains seven repeat units of 497 bp, plus 11 kb of flanking genomic sequence at one border. Sequencing of individual subcloned repeat units shows that the sequence of the 5S rRNA coding region is very similar to that reported for other flowering plants. Four A. thaliana ecotypes were found to contain approx. 1000 copies of 5S rDNA per haploid genome. Southern-blot analysis of genomic DNA indicates that 5S rDNA occurs in long tandem arrays, and shows the presence of numerous restriction-site polymorphisms among the six ecotypes studied.

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Year:  1992        PMID: 1348233     DOI: 10.1016/0378-1119(92)90380-8

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  60 in total

1.  Analysis of 5S rDNA arrays in Arabidopsis thaliana: physical mapping and chromosome-specific polymorphisms.

Authors:  C Cloix; S Tutois; O Mathieu; C Cuvillier; M C Espagnol; G Picard; S Tourmente
Journal:  Genome Res       Date:  2000-05       Impact factor: 9.043

2.  Structural analysis and physical mapping of a pericentromeric region of chromosome 5 of Arabidopsis thaliana.

Authors:  S Tutois; C Cloix; C Cuvillier; M C Espagnol; J Lafleuriel; G Picard; S Tourmente
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

3.  The maize unstable factor for orange1 is a dominant epigenetic modifier of a tissue specifically silent allele of pericarp color1.

Authors:  Surinder Chopra; Suzy M Cocciolone; Shaun Bushman; Vineet Sangar; Michael D McMullen; Thomas Peterson
Journal:  Genetics       Date:  2003-03       Impact factor: 4.562

4.  Changes in 5S rDNA chromatin organization and transcription during heterochromatin establishment in Arabidopsis.

Authors:  Olivier Mathieu; Zuzana Jasencakova; Isabelle Vaillant; Anne-Valerie Gendrel; Vincent Colot; Ingo Schubert; Sylvette Tourmente
Journal:  Plant Cell       Date:  2003-11-20       Impact factor: 11.277

5.  The origin, meiotic behavior, and transmission of a novel minichromosome in Arabidopsis thaliana.

Authors:  Minoru Murata; Fukashi Shibata; Etsuko Yokota
Journal:  Chromosoma       Date:  2006-04-11       Impact factor: 4.316

6.  Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula.

Authors:  Olga Kulikova; René Geurts; Monique Lamine; Dong-Jin Kim; Douglas R Cook; Jack Leunissen; Hans de Jong; Bruce A Roe; Ton Bisseling
Journal:  Chromosoma       Date:  2004-10-06       Impact factor: 4.316

7.  Differential Involvement of the Circadian Clock in the Expression of Genes Required for Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Synthesis, Assembly, and Activation in Arabidopsis thaliana.

Authors:  M. L. Pilgrim; C. R. McClung
Journal:  Plant Physiol       Date:  1993-10       Impact factor: 8.340

8.  Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

Authors:  Michael D Bennett; Ilia J Leitch; H James Price; J Spencer Johnston
Journal:  Ann Bot       Date:  2003-04       Impact factor: 4.357

9.  The control of natural variation in cytosine methylation in Arabidopsis.

Authors:  Nicole C Riddle; Eric J Richards
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

10.  The behaviour of the autonomous maize transposable element En/Spm in Arabidopsis thaliana allows efficient mutagenesis.

Authors:  E Wisman; G H Cardon; P Fransz; H Saedler
Journal:  Plant Mol Biol       Date:  1998-08       Impact factor: 4.076

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