Literature DB >> 1332027

Extended x-ray absorption fine structure studies of a retrovirus: equine infectious anemia virus cysteine arrays are coordinated to zinc.

M R Chance1, I Sagi, M D Wirt, S M Frisbie, E Scheuring, E Chen, J W Bess, L E Henderson, L O Arthur, T L South.   

Abstract

Zinc finger arrays have been established as a critical structural feature of proteins involved in DNA recognition. Retroviral nucleocapsid proteins, which are involved in the binding of viral RNA, contain conserved cysteine-rich arrays that have been suggested to coordinate zinc. We provide metalloprotein structural data from an intact virus preparation that validate this hypothesis. Extended x-ray absorption fine structure (EXAFS) spectroscopy of well-characterized and active preparations of equine infectious anemia virus, compared with a peptide with known coordination and in combination with available biochemical and genetic data, defines a Cys3His1 coordination environment for zinc. The average of the Zn-S distances is 2.30(1) A and that of the Zn-N distance (to histidine) is 2.01(3) A.

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Year:  1992        PMID: 1332027      PMCID: PMC50273          DOI: 10.1073/pnas.89.21.10041

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  High-resolution structure of an HIV zinc fingerlike domain via a new NMR-based distance geometry approach.

Authors:  M F Summers; T L South; B Kim; D R Hare
Journal:  Biochemistry       Date:  1990-01-16       Impact factor: 3.162

2.  A retroviral Cys-Xaa2-Cys-Xaa4-His-Xaa4-Cys peptide binds metal ions: spectroscopic studies and a proposed three-dimensional structure.

Authors:  L M Green; J M Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

3.  C-terminal retroviral-type zinc finger domain from the HIV-1 nucleocapsid protein is structurally similar to the N-terminal zinc finger domain.

Authors:  T L South; P R Blake; D R Hare; M F Summers
Journal:  Biochemistry       Date:  1991-06-25       Impact factor: 3.162

4.  Characterization of Moloney murine leukemia virus mutants with single-amino-acid substitutions in the Cys-His box of the nucleocapsid protein.

Authors:  C Méric; S P Goff
Journal:  J Virol       Date:  1989-04       Impact factor: 5.103

5.  Retroviral nucleocapsid protein-metal ion interactions: folding and sequence variants.

Authors:  L M Green; J M Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

6.  Complete amino acid sequence of the basic nucleic acid binding protein of feline leukemia virus.

Authors:  T D Copeland; M A Morgan; S Oroszlan
Journal:  Virology       Date:  1984-02       Impact factor: 3.616

7.  Point mutants of Moloney murine leukemia virus that fail to package viral RNA: evidence for specific RNA recognition by a "zinc finger-like" protein sequence.

Authors:  R J Gorelick; L E Henderson; J P Hanser; A Rein
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

8.  p10 single-stranded nucleic acid binding protein from murine leukemia virus binds metal ions via the peptide sequence Cys26-X2-Cys29-X4-His34-X4-Cys39.

Authors:  W J Roberts; T Pan; J I Elliott; J E Coleman; K R Williams
Journal:  Biochemistry       Date:  1989-12-26       Impact factor: 3.162

9.  X-ray absorption studies of myoglobin peroxide reveal functional differences between globins and heme enzymes.

Authors:  M Chance; L Powers; C Kumar; B Chance
Journal:  Biochemistry       Date:  1986-03-25       Impact factor: 3.162

10.  Structural features and the reaction mechanism of cytochrome oxidase: iron and copper X-ray absorption fine structure.

Authors:  L Powers; B Chance; Y Ching; P Angiolillo
Journal:  Biophys J       Date:  1981-06       Impact factor: 4.033

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  23 in total

1.  Experimental determination and calculations of redox potential descriptors of compounds directed against retroviral zinc fingers: Implications for rational drug design.

Authors:  I A Topol; C McGrath; E Chertova; C Dasenbrock; W R Lacourse; M A Eissenstat; S K Burt; L E Henderson; J R Casas-Finet
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  High-throughput computational and experimental techniques in structural genomics.

Authors:  Mark R Chance; Andras Fiser; Andrej Sali; Ursula Pieper; Narayanan Eswar; Guiping Xu; J Eduardo Fajardo; Thirumuruhan Radhakannan; Nebojsa Marinkovic
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

3.  Genetic analysis of the zinc finger in the Moloney murine leukemia virus nucleocapsid domain: replacement of zinc-coordinating residues with other zinc-coordinating residues yields noninfectious particles containing genomic RNA.

Authors:  R J Gorelick; D J Chabot; D E Ott; T D Gagliardi; A Rein; L E Henderson; L O Arthur
Journal:  J Virol       Date:  1996-04       Impact factor: 5.103

4.  Elimination of retroviral infectivity by N-ethylmaleimide with preservation of functional envelope glycoproteins.

Authors:  David R Morcock; James A Thomas; Tracy D Gagliardi; Robert J Gorelick; J David Roser; Elena N Chertova; Julian W Bess; David E Ott; Quentin J Sattentau; Ines Frank; Melissa Pope; Jeffrey D Lifson; Louis E Henderson; Bruce J Crise
Journal:  J Virol       Date:  2005-02       Impact factor: 5.103

Review 5.  Structural determinants and mechanism of HIV-1 genome packaging.

Authors:  Kun Lu; Xiao Heng; Michael F Summers
Journal:  J Mol Biol       Date:  2011-07-22       Impact factor: 5.469

6.  Inactivation of murine leukemia virus by compounds that react with the zinc finger in the viral nucleocapsid protein.

Authors:  A Rein; D E Ott; J Mirro; L O Arthur; W Rice; L E Henderson
Journal:  J Virol       Date:  1996-08       Impact factor: 5.103

7.  Evidence that a central domain of nucleocapsid protein is required for RNA packaging in murine leukemia virus.

Authors:  A Rein; D P Harvin; J Mirro; S M Ernst; R J Gorelick
Journal:  J Virol       Date:  1994-09       Impact factor: 5.103

8.  The central globular domain of the nucleocapsid protein of human immunodeficiency virus type 1 is critical for virion structure and infectivity.

Authors:  M Ottmann; C Gabus; J L Darlix
Journal:  J Virol       Date:  1995-03       Impact factor: 5.103

9.  Three-dimensional 1H NMR structure of the nucleocapsid protein NCp10 of Moloney murine leukemia virus.

Authors:  H Déméné; N Jullian; N Morellet; H de Rocquigny; F Cornille; B Maigret; B P Roques
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

10.  Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein.

Authors:  T Dorfman; J Luban; S P Goff; W A Haseltine; H G Göttlinger
Journal:  J Virol       Date:  1993-10       Impact factor: 5.103

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