Literature DB >> 1327137

Proton transfer in catalysis by fumarase.

I A Rose1, J V Warms, D J Kuo.   

Abstract

Using 3T[14C]malate it was possible to show intermolecular T-transfer to unlabeled fumarate. The rate of dissociation of ET derived from the malate was not rapid, only about as fast as required for KMcat. Because of the slow dissociation of ET derived from T-malate, the awkward complex ET-malate is readily formed. As shown by the effect of added malate on the partition of ET, otherwise captured by fumarate, ET.malate must be functional. Its rate of dissociation to E.M determines the V/Km value of malate. Hydrogen dissociation of the complex ET.F was linearly related to the concentration and basicity of the buffer provided, varying from < 10% to > 60% of the overall rate with alkyl phosphonates. Partition of EH.F to free malate or fumarate occurs in a ratio approximately 2:1 at both low and high buffer. This agrees well with the comparison of the equilibrium exchange rates: malate with [18O]water to malate with [14C]-fumarate [Hansen, J.N., Dinovo, E.C., &amp; Boyer, P.D. (1969) J. Biol. Chem. 244, 6270-6279]. Therefore, the abstracted hydroxyl group is fully exchanged from the enzyme when the bound hydrogen and fumarate return to malate and must be much more accessible to the medium than the abstracted proton. The fact that buffer increases the rate of proton transfer to the medium in the central complex makes it appear that a proton relay connects the active site donor with a remote site that interfaces with the ultimate proton source, water.

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Year:  1992        PMID: 1327137     DOI: 10.1021/bi00156a019

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  5 in total

1.  Identification of the catalytic mechanism and estimation of kinetic parameters for fumarase.

Authors:  Muriel Mescam; Kalyan C Vinnakota; Daniel A Beard
Journal:  J Biol Chem       Date:  2011-04-15       Impact factor: 5.157

2.  Mutations of fumarase that distinguish between the active site and a nearby dicarboxylic acid binding site.

Authors:  T Weaver; M Lees; L Banaszak
Journal:  Protein Sci       Date:  1997-04       Impact factor: 6.725

3.  About the pKa of the active-site histidine in flavocytochrome b2 (yeast L-lactate dehydrogenase).

Authors:  K S Rao; F Lederer
Journal:  Protein Sci       Date:  1998-07       Impact factor: 6.725

4.  The role of the allosteric B site in the fumarase reaction.

Authors:  Irwin A Rose; Todd M Weaver
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

5.  Detection of an enzyme isomechanism by means of the kinetics of covalent inhibition.

Authors:  S A Adediran; Michael J Morrison; R F Pratt
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2021-06-02       Impact factor: 4.125

  5 in total

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