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Literature DB >> 1325566

Phylogenetic evidence for multiple Alu source genes.

E P Leeflang¹, W M Liu, C Hashimoto, P V Choudary, C W Schmid.

Abstract

A member of the young PV Alu subfamily is detected in chimpanzee DNA showing that the PV subfamily is not specific to human DNA. This particular Alu is absent from the orthologous loci in both human and gorilla DNAs, indicating that PV subfamily members transposed within the chimpanzee lineage following the divergence of chimpanzee from both gorilla and human. These findings and previous reports describing the transpositional activity of other Alu sequences within the human, gorilla, and chimpanzee lineages provide phylogenetic evidence for the existence of multiple Alu source genes. Sequences surrounding this particular Alu resemble known transcriptional control elements associated with RNA polymerase III, suggesting a mechanism by which cis-acting elements might be acquired upon retrotransposition.

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Year: 1992 PMID： 1325566 DOI： 10.1007/bf00160256

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

40 in total

1. A human-specific subfamily of Alu sequences.

Authors: M A Batzer; P L Deininger
Journal: Genomics Date: 1991-03 Impact factor: 5.736

2. Structure and variability of recently inserted Alu family members.

Authors: M A Batzer; G E Kilroy; P E Richard; T H Shaikh; T D Desselle; C L Hoppens; P L Deininger
Journal: Nucleic Acids Res Date: 1990-12-11 Impact factor: 16.971

3. Inactivation of the cholinesterase gene by Alu insertion: possible mechanism for human gene transposition.

Authors: K Muratani; T Hada; Y Yamamoto; T Kaneko; Y Shigeto; T Ohue; J Furuyama; K Higashino
Journal: Proc Natl Acad Sci U S A Date: 1991-12-15 Impact factor: 11.205

4. Duplication of seven exons in LDL receptor gene caused by Alu-Alu recombination in a subject with familial hypercholesterolemia.

Authors: M A Lehrman; J L Goldstein; D W Russell; M S Brown
Journal: Cell Date: 1987-03-13 Impact factor: 41.582

5. Existence of at least three distinct Alu subfamilies.

Authors: C Willard; H T Nguyen; C W Schmid
Journal: J Mol Evol Date: 1987 Impact factor: 2.395

6. Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements.

Authors: D Stoppa-Lyonnet; P E Carter; T Meo; M Tosi
Journal: Proc Natl Acad Sci U S A Date: 1990-02 Impact factor: 11.205

7. A transpositionally and transcriptionally competent Alu subfamily.

Authors: A G Matera; U Hellmann; C W Schmid
Journal: Mol Cell Biol Date: 1990-10 Impact factor: 4.272

8. Human Alu subfamilies and their methylation revealed by blot hybridization.

Authors: C W Schmid
Journal: Nucleic Acids Res Date: 1991-10-25 Impact factor: 16.971

Review 9. Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors: D Botstein; R L White; M Skolnick; R W Davis
Journal: Am J Hum Genet Date: 1980-05 Impact factor: 11.025

10. Recombination and balanced chromosome polymorphism suggested by DNA sequences 5' to the human delta-globin gene.

Authors: N Maeda; J B Bliska; O Smithies
Journal: Proc Natl Acad Sci U S A Date: 1983-08 Impact factor: 11.205

32 in total

1. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history.

Authors: Alkes L Price; Eleazar Eskin; Pavel A Pevzner
Journal: Genome Res Date: 2004-11 Impact factor: 9.043

Review 2. Emergence of master sequences in families of retroposons derived from 7sl RNA.

Authors: Y Quentin
Journal: Genetica Date: 1994 Impact factor: 1.082

3. A population genetic study of the evolution of SINEs. I. Polymorphism with regard to the presence or absence of an element.

Authors: H Tachida; M Iizuka
Journal: Genetics Date: 1993-04 Impact factor: 4.562

Phylogenetic evidence for multiple Alu source genes.

1. A human-specific subfamily of Alu sequences.

2. Structure and variability of recently inserted Alu family members.

3. Inactivation of the cholinesterase gene by Alu insertion: possible mechanism for human gene transposition.

4. Duplication of seven exons in LDL receptor gene caused by Alu-Alu recombination in a subject with familial hypercholesterolemia.

5. Existence of at least three distinct Alu subfamilies.

6. Clusters of intragenic Alu repeats predispose the human C1 inhibitor locus to deleterious rearrangements.

7. A transpositionally and transcriptionally competent Alu subfamily.

8. Human Alu subfamilies and their methylation revealed by blot hybridization.

Review 9. Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

10. Recombination and balanced chromosome polymorphism suggested by DNA sequences 5' to the human delta-globin gene.

1. Whole-genome analysis of Alu repeat elements reveals complex evolutionary history.

Review 2. Emergence of master sequences in families of retroposons derived from 7sl RNA.

3. A population genetic study of the evolution of SINEs. I. Polymorphism with regard to the presence or absence of an element.

4. RNA polymerase III promoter and terminator elements affect Alu RNA expression.

5. Phylogenetic relationships among transposon-like elements in human and primate DNA.

6. Two persistent LINE-1 lineages in Peromyscus have unequal rates of evolution.

7. A population genetic study of the evolution of SINEs. II. Sequence evolution under the master copy model.

8. Multiple dispersed loci produce small cytoplasmic Alu RNA.

9. Distribution and frequency of a polymorphic Alu insertion at the plasminogen activator locus in humans.

10. A human Alu RNA-binding protein whose expression is associated with accumulation of small cytoplasmic Alu RNA.