Literature DB >> 1312710

The initiation accuracy of the SV40 early transcription is determined by the functional domains of two TATA elements.

M Pauly1, M Treger, E Westhof, P Chambon.   

Abstract

To locate the boundaries of the TATA element in the SV40 early promoter, point mutations have been constructed such as to cover the whole T + A-rich region of the replication origin. The effects of these mutations on the rate of transcription in vivo show that this region actually contains two TATA elements I and II, each independently directing the accurate initiation of transcription from a specified set of start sites, EES1 and EES2, respectively. The sequence of TATA element I fits best with the compiled 'consensus' sequence found in eukaryotic gene promoters and is the most efficient in directing transcription initiation. Mutations which improve this fit can still increase the rate of transcription, confirming the theory of a correlation between the nucleotide sequence of a TATA element and its functional efficiency. Moreover, some mutations which simultaneously modify the angle of DNA curvature in the T + A-rich promoter region and the rate of transcription reveal a correlation between DNA bending and transcription initiation.

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Year:  1992        PMID: 1312710      PMCID: PMC312079          DOI: 10.1093/nar/20.5.975

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  29 in total

1.  The A+T-rich sequence of the simian virus 40 origin is essential for replication and is involved in bending of the viral DNA.

Authors:  G Z Hertz; M R Young; J E Mertz
Journal:  J Virol       Date:  1987-07       Impact factor: 5.103

Review 2.  Transcription elements and factors of RNA polymerase B promoters of higher eukaryotes.

Authors:  B Wasylyk
Journal:  CRC Crit Rev Biochem       Date:  1988

3.  Characterization of a surrogate TATA box promoter that regulates in vitro transcription of the simian virus 40 major late gene.

Authors:  A Nandi; G Das; N P Salzman
Journal:  Mol Cell Biol       Date:  1985-03       Impact factor: 4.272

4.  Requirement of stereospecific alignments for initiation from the simian virus 40 early promoter.

Authors:  K Takahashi; M Vigneron; H Matthes; A Wildeman; M Zenke; P Chambon
Journal:  Nature       Date:  1986 Jan 9-15       Impact factor: 49.962

5.  Compilation and analysis of eukaryotic POL II promoter sequences.

Authors:  P Bucher; E N Trifonov
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

Review 6.  The regulation of transcription initiation in bacteria.

Authors:  W S Reznikoff; D A Siegele; D W Cowing; C A Gross
Journal:  Annu Rev Genet       Date:  1985       Impact factor: 16.830

7.  Identification of a promoter component involved in positioning the 5' termini of simian virus 40 early mRNAs.

Authors:  P K Ghosh; P Lebowitz; R J Frisque; Y Gluzman
Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

8.  A set of synthetic oligodeoxyribonucleotide primers for DNA sequencing in the plasmid vector pBR322.

Authors:  R B Wallace; M J Johnson; S V Suggs; K Miyoshi; R Bhatt; K Itakura
Journal:  Gene       Date:  1981-12       Impact factor: 3.688

9.  Transcription in vivo from SV40 early promoter deletion mutants without repression by large T antigen.

Authors:  M Fromm; P Berg
Journal:  J Mol Appl Genet       Date:  1983

10.  Multiple sequence motifs are involved in SV40 enhancer function.

Authors:  M Zenke; T Grundström; H Matthes; M Wintzerith; C Schatz; A Wildeman; P Chambon
Journal:  EMBO J       Date:  1986-02       Impact factor: 11.598

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  6 in total

1.  Mutation spectra of TA*, the major photoproduct of thymidylyl-(3'5')-deoxyadenosine, in Escherichia coli under SOS conditions.

Authors:  X Zhao; J S Taylor
Journal:  Nucleic Acids Res       Date:  1996-04-15       Impact factor: 16.971

2.  Experimentally determined weight matrix definitions of the initiator and TBP binding site elements of promoters.

Authors:  R J Kraus; E E Murray; S R Wiley; N M Zink; K Loritz; G W Gelembiuk; J E Mertz
Journal:  Nucleic Acids Res       Date:  1996-04-15       Impact factor: 16.971

3.  Intrinsic curvature in the VP1 gene of SV40: comparison of solution and gel results.

Authors:  Yongjun Lu; Brock D Weers; Nancy C Stellwagen
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

4.  cdc2 phosphorylation of threonine 124 activates the origin-unwinding functions of simian virus 40 T antigen.

Authors:  D McVey; S Ray; Y Gluzman; L Berger; A G Wildeman; D R Marshak; P Tegtmeyer
Journal:  J Virol       Date:  1993-09       Impact factor: 5.103

5.  Transcription factor Oct1 binds to the AT-rich segment of the simian virus 40 replication origin.

Authors:  J Kilwinski; M Baack; S Heiland; R Knippers
Journal:  J Virol       Date:  1995-01       Impact factor: 5.103

6.  Both Arabidopsis TATA binding protein (TBP) isoforms are functionally identical in RNA polymerase II and III transcription in plant cells: evidence for gene-specific changes in DNA binding specificity of TBP.

Authors:  D J Heard; T Kiss; W Filipowicz
Journal:  EMBO J       Date:  1993-09       Impact factor: 11.598

  6 in total

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