Literature DB >> 12975370

Tuning heme redox potentials in the cytochrome C subunit of photosynthetic reaction centers.

Philipp Voigt1, Ernst-Walter Knapp.   

Abstract

The photosynthetic reaction center (RC) from Rhodopseudomonas viridis contains four cytochrome c hemes. They establish the initial part of the electron transfer (ET) chain through the RC. Despite their chemical identity, their midpoint potentials cover an interval of 440 mV. The individual heme midpoint potentials determine the ET kinetics and are therefore tuned by specific interactions with the protein environment. Here, we use an electrostatic approach based on the solution of the linearized Poisson-Boltzmann equation to evaluate the determinants of individual heme redox potentials. Our calculated redox potentials agree within 25 meV with the experimentally measured values. The heme redox potentials are mainly governed by solvent accessibility of the hemes and propionic acids, by neutralization of the negative charges at the propionates through either protonation or formation of salt bridges, by interactions with other hemes, and to a lesser extent, with other titratable protein side chains. In contrast to earlier computations on this system, we used quantum chemically derived atomic charges, considered an equilibrium-distributed protonation pattern, and accounted for interdependencies of site-site interactions. We provide values for the working potentials of all hemes as a function of the solution redox potential, which are crucial for calculations of ET rates. We identify residues whose site-directed mutation might significantly influence ET processes in the cytochrome c part of the RC. Redox potentials measured on a previously generated mutant could be reproduced by calculations based on a model structure of the mutant generated from the wild type RC.

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Year:  2003        PMID: 12975370     DOI: 10.1074/jbc.M307560200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  19 in total

1.  Electron transfer pathways in a multiheme cytochrome MtrF.

Authors:  Hiroshi C Watanabe; Yuki Yamashita; Hiroshi Ishikita
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Stability and fluctuations of amide hydrogen bonds in a bacterial cytochrome c: a molecular dynamics study.

Authors:  Gernot Kieseritzky; Giulia Morra; Ernst-Walter Knapp
Journal:  J Biol Inorg Chem       Date:  2005-11-16       Impact factor: 3.358

3.  Conformational transitions and redox potential shifts of cytochrome P450 induced by immobilization.

Authors:  Smilja Todorovic; Christiane Jung; Peter Hildebrandt; Daniel H Murgida
Journal:  J Biol Inorg Chem       Date:  2005-12-03       Impact factor: 3.358

4.  Calculated proton uptake on anaerobic reduction of cytochrome C oxidase: is the reaction electroneutral?

Authors:  Yifan Song; Ekaterina Michonova-Alexova; M R Gunner
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

5.  Electrostatic environment of hemes in proteins: pK(a)s of hydroxyl ligands.

Authors:  Yifan Song; Junjun Mao; M R Gunner
Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

6.  Charge transport in the ClC-type chloride-proton anti-porter from Escherichia coli.

Authors:  Gernot Kieseritzky; Ernst-Walter Knapp
Journal:  J Biol Chem       Date:  2010-11-08       Impact factor: 5.157

7.  Computational studies on imidazole heme conformations.

Authors:  Artur S Galstyan; Snezana D Zarić; Ernst-Walter Knapp
Journal:  J Biol Inorg Chem       Date:  2005-04-21       Impact factor: 3.358

8.  Thermodynamic characterization of a triheme cytochrome family from Geobacter sulfurreducens reveals mechanistic and functional diversity.

Authors:  Leonor Morgado; Marta Bruix; Miguel Pessanha; Yuri Y Londer; Carlos A Salgueiro
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

9.  Stabilization and characterization of a heme-oxy reaction intermediate in inducible nitric-oxide synthase.

Authors:  Jesús Tejero; Ashis Biswas; Zhi-Qiang Wang; Richard C Page; Mohammad Mahfuzul Haque; Craig Hemann; Jay L Zweier; Saurav Misra; Dennis J Stuehr
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

Review 10.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

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